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CHR20202 (Phytophthora ramorum) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 |
>CHR20202 | Phytophthora ramorum | genomic sequence | RAD16 class
ggtacagata cgtagctcgt tatggctgag atgtgtcttg agctaacata ttgcggacac gctgtgcata cagtgtaaga gctgcgaaat aaagctcctg gtcaagaagc tccgcgttgg catcgacatt cgccactcga tgtttggtca aacgacgtac tacaaagtga gtgcatagtt tgatttgtta tttctgactg tagtacacgt ctaacctgtg ctccgggtct cttcaacagc atttggagtg cactcagatc ggtctaaaag ccgccaaact actgacgaaa gagtccaagg aggcggatcc cgatgctgag gagatcggca agacacctgc aaagaagaaa aagaagaagg atgagccaat tgaagggctg tcaaagctaa caccagcaga ccagaagcgt gttcgtgaat acatggagag caacgacctg gatggcgtta tcgacgaacg actcgacctc acggatgatc acttcgtcaa gaaaggccgc ATGCCAGAGA AGGAGCCGTC AAAGTACTTG ACAGCTACCC TTCTTCCGTA CCAGAGAGAA GCGCTGGCAT GGATGGTTGG GCAGGAAGAG GGAGGCTACA AGGGCGGTAT ACTTGCGGAC GAAATGGGCA TGGGAAAGAC TATTCAGGCT ATATCACTCG TGCTCGAAAA CGTTCGAGAA AAAGCAGGTG GGAAAAGTGC CAAAGCTAGG AGCGCTTCGG TTGTGCACGG TGGTACACTT GTTGTGTGTC CGCTAGTTGC AGTGATGCAG TGGAAAAGCG AGATCGAGAG ATTTGTGGAG CCTGGGCATT TATCCGTGTA CATTCACCAC GGGCCCAAGC GTCTGGATTC AGTGGAGAAA ATCGCCTCGT ACGATATTGT ACTGACGACT TACTCTATCA TTGAAAGTGA GATCCGGAAA ACCCTGGGCT GGTCAAAGGT TGCGTGCAAG TACTGCGGCA AGAAGTACTT ACCAGACAAG TTGGTCTCGC ACAACAAATA CTTTTGTGGA CCAAATGCGA GAAAGACTGC GCTACAAGAC AAGCAGCAGA AAAAGAAGCC CAAAAAGACA GCCGCTGGAG AAACGAGTGA AGAAGAGGAA AACGATGACT TGAAGAAACC AGTACAGAAG TCGAGGGGTC GAGCGAATCC GCGCTCGAAG AAAAAGGATG ATGACAAGAC ACCCTCTCTC CAGAAGACTA AAGGCAAGTC GCCACTTCAT CATATTAAAT GGACGCGTAT TGTTCTGGAC GAGGCGCACT ACATCAAAGA CCGGAATTGC AATACTGCGC GCGGTGTGTT TGAGCTGAAG TCTACGTACA AGTGGTGCTT GTCAGgtgag catgagttgc agtaagtgct gggataagct actgcagtct aacctactga tttctgtgta cagGCACGCC TCTGCAAAAT CGGATTGGCG AGTTGTTTTC TTTGGTTCGG TTTCTCCAAG TCAAGAAGTA CGCGTATTAC CACTGCAACG CGTGCGACTG CCAAATGTTG GACTACAAgt atgtgccact cactcttggt gatagttgag ttgtatctga cgtaaggtgt ttttgttgcc accagCTTCC CAGATAGAAA GTGTGTGCAA TGCAGCCACA GTGCCATTCA GCACTACTCA TACTTCAACA AGAAGGTCGT TATCCCGATT CAGGCATACG GCTACGTTGC TGAAGGCAAA CTTGCCATAC AACGCTTGCA AAATGACGTT CTCCAACACg taagtcccca agtgatttga gcttcgaaaa catagttcgt ttctcacgtg atgcactgta gATTTTACTG CGTCGTACGA AGGAGGGACG TGCAGACGAT ATTTCGCTTC CGCCCAAGCT AGTGCGTATT CGAAAGGACC GACTGGACGA ACGTGAAAAC GACTTCTACG AGGCGATTTA CACGCAAAGC CAAGCGCAGT TCAACACCTA TGTGTCGTCA GGAACGCTAT TGAACAACTA CGCTCACATC TTCGACCTCC TTATACGCCT GCGCCAGGCA GTAGACCACC CATACCTCGT CAGCTACTCC AAGTCGAACC CCGCACTCCA ACTCCCAAGT TCAGCTGCAC CGTTGGTGGA ACAGCAGCCC TTCAACACGA GTGGAAACAG TAGCCCCGAG GACGAGCGAG CGTGCATTAT CTGCCACGAG TATGTGGAAG ATGGGGTTGT TGCAAAATGT GGCCACGAGT TCTGCCGGGA GTGTGTGAAG GAATACATCG AGTCGATTCC GGCCGGCGGA GAAGCGATAT GCACTGCGTG CTCAAAGCCA CTGACGGTCG ATCTTTCTGC ACCTATTGAG GCAGACATCA ATGCTTCAAA CCAGGCCGCC AACGCATCGA GCAGTCGCTC GCCCAAGACT GTGAACTTGT CCAGCTTTCA TCGGAACAGC ATCCTCCACC GAATATCCGA CGTCCACGCT TTCCAGTCCA GCACTAAGAT TGAAGCGCTT ATGCAGGAGC TCGAGCTCAT GCGTATTCGA GACCCGTCCG GGAAAGCCAT CATTTTCTCA CAGTTTGTCA ACATGCTAGA TATTATCCAG CATCGGCTGC AGCTTGGTGG GGTCAAGTGT GTGAAGCTGT CGGGCAACAT GAGCATGGCT GCGCGAGATC GAACCATTAA AGCCTTCCGT GACGACCCGA TGGTGACAGC CTTCTTGATC AGTCTCAAGG CTGGCGGTGT TGCACTCAAC CTGACCGTTG CATCACAgta cgtctgcctg cagttgctgg gcatgcttct gtcgtctcat cttgtttttg tgtctactgt agCATTTTCC TGATGGACCC GTGGTGGAAC CCTGCGGCTG AAAACCAGGC AATCGATCGC ACTCACCGCC TGGGCCAGTT CAAGCCGATT CAAGCCACTC GCTTCATCAT CGCTGGCACG GTGGAGGAGC GCATCCTGAA GCTTCAGGAG AAGAAGCAGC TGATCTTTGA AGGAACCGTC GGAGCGAACG TGAGCGCTAT CTGCCGTCTC ACCGAAGAAG ACCTGCGATT CCTCTTTGCG ACGTGAtcgg agctgctgga tccctctttg cattcagttg ctgttcattg ctgtattttc gagcgagtta tcgggctaag gcaactaact aatcaaagta cacagtgagc aggtatcaaa aaccagcaag ccaaaaagta aacaagagta cacaagcgct caacaaaata atacgaaggc aggcaggaag ttgaggcgcc aagctggaag gacaggacac tctgctctgg cttgtgctag tgtgcatcac caatgcctcc cctcaatgcg tgtaatccag cgcattcgac ggcatccccg ccaccccata caaaaacggc gacgccagtt gggggtcgtt ctgctggtac gaagggatgt actgcagcgg cagtgcctgc atgccgaagt ggagcccatt ggctgtcgga agaggaggca tggcgtgctg gggcattccc aagagctgct gcggataaac ggcaagcgaa tgctgctgtt gctgaacatg ttgcatctgc tgctgc |
Transcript Splice Model
501-1335 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 |
>CHR20202 | Phytophthora ramorum | transcript sequence | RAD16 class
ATGCCAGAGA AGGAGCCGTC AAAGTACTTG ACAGCTACCC TTCTTCCGTA CCAGAGAGAA GCGCTGGCAT GGATGGTTGG GCAGGAAGAG GGAGGCTACA AGGGCGGTAT ACTTGCGGAC GAAATGGGCA TGGGAAAGAC TATTCAGGCT ATATCACTCG TGCTCGAAAA CGTTCGAGAA AAAGCAGGTG GGAAAAGTGC CAAAGCTAGG AGCGCTTCGG TTGTGCACGG TGGTACACTT GTTGTGTGTC CGCTAGTTGC AGTGATGCAG TGGAAAAGCG AGATCGAGAG ATTTGTGGAG CCTGGGCATT TATCCGTGTA CATTCACCAC GGGCCCAAGC GTCTGGATTC AGTGGAGAAA ATCGCCTCGT ACGATATTGT ACTGACGACT TACTCTATCA TTGAAAGTGA GATCCGGAAA ACCCTGGGCT GGTCAAAGGT TGCGTGCAAG TACTGCGGCA AGAAGTACTT ACCAGACAAG TTGGTCTCGC ACAACAAATA CTTTTGTGGA CCAAATGCGA GAAAGACTGC GCTACAAGAC AAGCAGCAGA AAAAGAAGCC CAAAAAGACA GCCGCTGGAG AAACGAGTGA AGAAGAGGAA AACGATGACT TGAAGAAACC AGTACAGAAG TCGAGGGGTC GAGCGAATCC GCGCTCGAAG AAAAAGGATG ATGACAAGAC ACCCTCTCTC CAGAAGACTA AAGGCAAGTC GCCACTTCAT CATATTAAAT GGACGCGTAT TGTTCTGGAC GAGGCGCACT ACATCAAAGA CCGGAATTGC AATACTGCGC GCGGTGTGTT TGAGCTGAAG TCTACGTACA AGTGGTGCTT GTCAGGCACG CCTCTGCAAA ATCGGATTGG CGAGTTGTTT TCTTTGGTTC GGTTTCTCCA AGTCAAGAAG TACGCGTATT ACCACTGCAA CGCGTGCGAC TGCCAAATGT TGGACTACAA CTTCCCAGAT AGAAAGTGTG TGCAATGCAG CCACAGTGCC ATTCAGCACT ACTCATACTT CAACAAGAAG GTCGTTATCC CGATTCAGGC ATACGGCTAC GTTGCTGAAG GCAAACTTGC CATACAACGC TTGCAAAATG ACGTTCTCCA ACACATTTTA CTGCGTCGTA CGAAGGAGGG ACGTGCAGAC GATATTTCGC TTCCGCCCAA GCTAGTGCGT ATTCGAAAGG ACCGACTGGA CGAACGTGAA AACGACTTCT ACGAGGCGAT TTACACGCAA AGCCAAGCGC AGTTCAACAC CTATGTGTCG TCAGGAACGC TATTGAACAA CTACGCTCAC ATCTTCGACC TCCTTATACG CCTGCGCCAG GCAGTAGACC ACCCATACCT CGTCAGCTAC TCCAAGTCGA ACCCCGCACT CCAACTCCCA AGTTCAGCTG CACCGTTGGT GGAACAGCAG CCCTTCAACA CGAGTGGAAA CAGTAGCCCC GAGGACGAGC GAGCGTGCAT TATCTGCCAC GAGTATGTGG AAGATGGGGT TGTTGCAAAA TGTGGCCACG AGTTCTGCCG GGAGTGTGTG AAGGAATACA TCGAGTCGAT TCCGGCCGGC GGAGAAGCGA TATGCACTGC GTGCTCAAAG CCACTGACGG TCGATCTTTC TGCACCTATT GAGGCAGACA TCAATGCTTC AAACCAGGCC GCCAACGCAT CGAGCAGTCG CTCGCCCAAG ACTGTGAACT TGTCCAGCTT TCATCGGAAC AGCATCCTCC ACCGAATATC CGACGTCCAC GCTTTCCAGT CCAGCACTAA GATTGAAGCG CTTATGCAGG AGCTCGAGCT CATGCGTATT CGAGACCCGT CCGGGAAAGC CATCATTTTC TCACAGTTTG TCAACATGCT AGATATTATC CAGCATCGGC TGCAGCTTGG TGGGGTCAAG TGTGTGAAGC TGTCGGGCAA CATGAGCATG GCTGCGCGAG ATCGAACCAT TAAAGCCTTC CGTGACGACC CGATGGTGAC AGCCTTCTTG ATCAGTCTCA AGGCTGGCGG TGTTGCACTC AACCTGACCG TTGCATCACA CATTTTCCTG ATGGACCCGT GGTGGAACCC TGCGGCTGAA AACCAGGCAA TCGATCGCAC TCACCGCCTG GGCCAGTTCA AGCCGATTCA AGCCACTCGC TTCATCATCG CTGGCACGGT GGAGGAGCGC ATCCTGAAGC TTCAGGAGAA GAAGCAGCTG ATCTTTGAAG GAACCGTCGG AGCGAACGTG AGCGCTATCT GCCGTCTCAC CGAAGAAGAC CTGCGATTCC TCTTTGCGAC GTGA |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 |
>CHR20202 | Phytophthora ramorum | orf sequence | RAD16 class
ATGCCAGAGA AGGAGCCGTC AAAGTACTTG ACAGCTACCC TTCTTCCGTA CCAGAGAGAA GCGCTGGCAT GGATGGTTGG GCAGGAAGAG GGAGGCTACA AGGGCGGTAT ACTTGCGGAC GAAATGGGCA TGGGAAAGAC TATTCAGGCT ATATCACTCG TGCTCGAAAA CGTTCGAGAA AAAGCAGGTG GGAAAAGTGC CAAAGCTAGG AGCGCTTCGG TTGTGCACGG TGGTACACTT GTTGTGTGTC CGCTAGTTGC AGTGATGCAG TGGAAAAGCG AGATCGAGAG ATTTGTGGAG CCTGGGCATT TATCCGTGTA CATTCACCAC GGGCCCAAGC GTCTGGATTC AGTGGAGAAA ATCGCCTCGT ACGATATTGT ACTGACGACT TACTCTATCA TTGAAAGTGA GATCCGGAAA ACCCTGGGCT GGTCAAAGGT TGCGTGCAAG TACTGCGGCA AGAAGTACTT ACCAGACAAG TTGGTCTCGC ACAACAAATA CTTTTGTGGA CCAAATGCGA GAAAGACTGC GCTACAAGAC AAGCAGCAGA AAAAGAAGCC CAAAAAGACA GCCGCTGGAG AAACGAGTGA AGAAGAGGAA AACGATGACT TGAAGAAACC AGTACAGAAG TCGAGGGGTC GAGCGAATCC GCGCTCGAAG AAAAAGGATG ATGACAAGAC ACCCTCTCTC CAGAAGACTA AAGGCAAGTC GCCACTTCAT CATATTAAAT GGACGCGTAT TGTTCTGGAC GAGGCGCACT ACATCAAAGA CCGGAATTGC AATACTGCGC GCGGTGTGTT TGAGCTGAAG TCTACGTACA AGTGGTGCTT GTCAGGCACG CCTCTGCAAA ATCGGATTGG CGAGTTGTTT TCTTTGGTTC GGTTTCTCCA AGTCAAGAAG TACGCGTATT ACCACTGCAA CGCGTGCGAC TGCCAAATGT TGGACTACAA CTTCCCAGAT AGAAAGTGTG TGCAATGCAG CCACAGTGCC ATTCAGCACT ACTCATACTT CAACAAGAAG GTCGTTATCC CGATTCAGGC ATACGGCTAC GTTGCTGAAG GCAAACTTGC CATACAACGC TTGCAAAATG ACGTTCTCCA ACACATTTTA CTGCGTCGTA CGAAGGAGGG ACGTGCAGAC GATATTTCGC TTCCGCCCAA GCTAGTGCGT ATTCGAAAGG ACCGACTGGA CGAACGTGAA AACGACTTCT ACGAGGCGAT TTACACGCAA AGCCAAGCGC AGTTCAACAC CTATGTGTCG TCAGGAACGC TATTGAACAA CTACGCTCAC ATCTTCGACC TCCTTATACG CCTGCGCCAG GCAGTAGACC ACCCATACCT CGTCAGCTAC TCCAAGTCGA ACCCCGCACT CCAACTCCCA AGTTCAGCTG CACCGTTGGT GGAACAGCAG CCCTTCAACA CGAGTGGAAA CAGTAGCCCC GAGGACGAGC GAGCGTGCAT TATCTGCCAC GAGTATGTGG AAGATGGGGT TGTTGCAAAA TGTGGCCACG AGTTCTGCCG GGAGTGTGTG AAGGAATACA TCGAGTCGAT TCCGGCCGGC GGAGAAGCGA TATGCACTGC GTGCTCAAAG CCACTGACGG TCGATCTTTC TGCACCTATT GAGGCAGACA TCAATGCTTC AAACCAGGCC GCCAACGCAT CGAGCAGTCG CTCGCCCAAG ACTGTGAACT TGTCCAGCTT TCATCGGAAC AGCATCCTCC ACCGAATATC CGACGTCCAC GCTTTCCAGT CCAGCACTAA GATTGAAGCG CTTATGCAGG AGCTCGAGCT CATGCGTATT CGAGACCCGT CCGGGAAAGC CATCATTTTC TCACAGTTTG TCAACATGCT AGATATTATC CAGCATCGGC TGCAGCTTGG TGGGGTCAAG TGTGTGAAGC TGTCGGGCAA CATGAGCATG GCTGCGCGAG ATCGAACCAT TAAAGCCTTC CGTGACGACC CGATGGTGAC AGCCTTCTTG ATCAGTCTCA AGGCTGGCGG TGTTGCACTC AACCTGACCG TTGCATCACA CATTTTCCTG ATGGACCCGT GGTGGAACCC TGCGGCTGAA AACCAGGCAA TCGATCGCAC TCACCGCCTG GGCCAGTTCA AGCCGATTCA AGCCACTCGC TTCATCATCG CTGGCACGGT GGAGGAGCGC ATCCTGAAGC TTCAGGAGAA GAAGCAGCTG ATCTTTGAAG GAACCGTCGG AGCGAACGTG AGCGCTATCT GCCGTCTCAC CGAAGAAGAC CTGCGATTCC TCTTTGCGAC GTGA |
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1 61 121 181 241 301 361 421 481 541 601 661 721 |
>CHR20202 | Phytophthora ramorum | protein sequence | RAD16 class
MPEKEPSKYL TATLLPYQRE ALAWMVGQEE GGYKGGILAD EMGMGKTIQA ISLVLENVRE KAGGKSAKAR SASVVHGGTL VVCPLVAVMQ WKSEIERFVE PGHLSVYIHH GPKRLDSVEK IASYDIVLTT YSIIESEIRK TLGWSKVACK YCGKKYLPDK LVSHNKYFCG PNARKTALQD KQQKKKPKKT AAGETSEEEE NDDLKKPVQK SRGRANPRSK KKDDDKTPSL QKTKGKSPLH HIKWTRIVLD EAHYIKDRNC NTARGVFELK STYKWCLSGT PLQNRIGELF SLVRFLQVKK YAYYHCNACD CQMLDYNFPD RKCVQCSHSA IQHYSYFNKK VVIPIQAYGY VAEGKLAIQR LQNDVLQHIL LRRTKEGRAD DISLPPKLVR IRKDRLDERE NDFYEAIYTQ SQAQFNTYVS SGTLLNNYAH IFDLLIRLRQ AVDHPYLVSY SKSNPALQLP SSAAPLVEQQ PFNTSGNSSP EDERACIICH EYVEDGVVAK CGHEFCRECV KEYIESIPAG GEAICTACSK PLTVDLSAPI EADINASNQA ANASSSRSPK TVNLSSFHRN SILHRISDVH AFQSSTKIEA LMQELELMRI RDPSGKAIIF SQFVNMLDII QHRLQLGGVK CVKLSGNMSM AARDRTIKAF RDDPMVTAFL ISLKAGGVAL NLTVASHIFL MDPWWNPAAE NQAIDRTHRL GQFKPIQATR FIIAGTVEER ILKLQEKKQL IFEGTVGANV SAICRLTEED LRFLFAT |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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