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JMJ2622 (Sorghum bicolor) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 4021 4081 4141 4201 4261 4321 4381 4441 4501 4561 4621 4681 4741 4801 4861 4921 4981 5041 5101 5161 5221 5281 5341 5401 |
>JMJ2622 | Sorghum bicolor | genomic sequence | JmjD1 Group
caggggggat cctgttgcgg acccctcttc tcttgagtct agtggtaaca tacaacttcg ggagaggcag aatgcttcag cggatcagga gcaggggcct aaggtgcaga ttgtcatctt cattgacctt gtgccttgag ttatcagcaa tacctgagtg tttttgcaat cttattaaac tgtagtaatg agtgcttgcg acggatttcc taatgcgtct tttgctttgc cctttaaaat ggttcattcg tttgcccatt ctagcatttt ccacacttac ttgctccagt tctttaccca tggtatagct gtatgcactc agtggaatgg caagtaatag ttacatctac atgaattaca tatacggaat atatcagatt ggcttacatt ctggcgcagc tgcttcactg gtacactttc tgctgttcgt acatgtgcat gcctcatatg ctttggttgc cgagttttgc agaagagaag taaggctgag gattcaaacA TGTGCCATCA GTGCCAGAGG AATGATAACG GAAGAGTTGT ACGGTGCCAA GGCTGTGTCA AAGAAAAGAG AAAATACAGA TACTGTGTGA AGTGCATTAA TCGCTGgttt gtgcccttct gacatcactt gtgtttttca cctgagattg catttgactc cctgcttttg gacagcaatg atttttggtt tctctcatct ctaattttgg tagcatgtta attttagtta ctatattggt gcctatttca acttgttttt atggtttcca cttagtattt tcactgtttg tgttttggca tgattgaatc agGTATCCAC ATTTATCAGA GGACGATTTT GCGAACAATT GCCCAGTTTG TCAAAAAAAT TGCAATTGTA AGGCCTGTCT GCGGGGAGAC ATAACCCGAA CCAACGCCAA Agttgtcaaa aagaaaggcc gaaccaaaaa gaaaaaccga accaactcca aggacaaaaa gaagtctcag ataataaatg tgtgccttct tcttgcttca tttccgctgt ctactgggcc aatgtgtttt actgtttacc tatttgctca tatttctttt ccagACTGAA GGATATAGTG TATCTGAACA AGATAAAATT CAATTCTCTA TGCGTATCGT GCGCTTTTTG CTCCCTTGGC TGAAAGAATT CCACCAAGAG CAGATGCAAG AGAAAAGTGC TGAGGCTGCA ACTAAAGgta gtatgattgc aactgcagca tttggatttc tagtttacgt gcatggctgc tactcattag tcattaatat tttttgttgt tcctaatttt gctatattag TAGGGATTGA TGCAGGCAAA CTAGAGGTCC CTCTAACCAT TTGTGGAAAA AATGAACGGA TATACTGgta agtgtggctt tacttacaga gtgtatgcaa attattggtt ttataagcgt ctaattcctc gttatatttg taacagTGAC AACTGCAGGA CATCTATTGT TGACTTCCAC AGAACCTGCA ATAAATGTAA CTATGATCTC TGCCTCCGGT GCTGCCGGGA GCTTCGTCGA GGCCTTGTTC CTGGTAATGG TGTCAAGGTT GATGGTGGAG GCAAGGAAGA TTTGCAATTG GGAGTTAGTC ATGATAAAAT TGTAAGTAAA GGGCCATCTG ATGGACAGAA TGGCATGTTA ATAGATAGTG TAGTTCCTGC TGACAAGAGC ACTTCTAGCT TGAGAGAGTG GAGTGTGAAT AACGATGGAA CCATACCTTG CCCACCAAAT GCATTTGGTG GTTGTGGGAG CTCTCTTCTT GAACTTAAGT GCTTGTTCGA AGAGACGTTT ATTGCTGAAT TACTGGAGAA GGCCAATTCA GCGGTCAATA ATGGAATGGA GGTGAAGATG GAAGGATCAA AATGTTCCTG CTTCACTGAA TCCGGTGACA TAGATGATGG TATATCGCGG AAAACAGCTT GCAGAGAGAA TTCCTGTGAT AACTACATAT ATTGCCCAAC CGCTACTGAT GTCCAAAATG GAAGTTTAGA TCATTTCCAG GAGCATTGGT TGAAGGGTGA ACCTGTAATT GTCCGTGATA CGCTTGCATT GACTTCTGGA TTAAGCTGGG AACCGATGGT TATGTGGCGC GCCTTACGAG AAAAGAGAGA CAAAGTTGAG AGGCTCTCAG TTCTTGCTCT TGAATGCTTG GGTTGGTGTG AGgtttgtaa tattcttgtg actactgtta ttagccggaa attataagat tttacaaaat gaaatttcta aaaactaatg ttactcccat gtactctgaa tgtagGTTGA TGTAAATATT CATATGTTTT TTGCGGGGTA TTCACGTGGG CTTGTTGGTC CAGACGATTT GCCTCTGTTA CTTAAGCTTA AAGATTGGCC ACCACATAGT TCTTTTGAGG AGCGGCTGCC AAGACATGGT GCAGAGTTTA TGTCTGCGTT GCCATTTCGC GAATACACAG ATCCTAAATG TGGTCCTCTT AATCTGGCAG TAAAGCTTCC CAAGGGTGTT AATAAGCCAG ACCTTGGTCC AAAGACTTAT ATTGCATATG GTGTTTCCAA AGAGTTGGGA ATTGGTGATT CTGTCACCAA GCTTCACTGC GATATGTCTG ATGCGgtaaa tatacagttt tcgcatatgc ttcttggctt tgatatgcaa ctctcagcaa taaagacttg tcttgttaag gacttaacaa cacttgattt tacagctata acactagttt aggtaataat tgcttgaagt cctgaaattc ggtgtttttg taactgtacc aattattgta atgacttaat gcttgttata atgggtggca gttttggatg accatagttc tggaaaatct agaaacaatg tcttggtttt caagatatat gaggctgttt ggtacgcggc caaactttgc ctcgccatgc agcagaggcc accaacagtt ggctgctgtt tggttgatca agatataagg ctgtttggta cgtggccaat cattgccccg ccatgcagcg gctgctacca acagttggct gctgtttggt tgatgtgttt gttgtggcag ccacactttt actcagttca tttatgtgct catttgcgcc aaagttgtgg cggccaaact ctccgccaca actcctcagc ggcgccgtag ctaggtggct ggcatcggct ggaaaccaaa caacctatat atctgccagc ttaatgttcc tggtttcatt tctgttcatt ggtgattctt ttttctatta tatatattat tttgtttttc ggttaagttc catctgtggc atcccacttt ctaattccta ttgcttgaac tggtctttat ttttctattt catatttctt gaacagGTGA ATATCCTCAC ACATACTGAT GAAATAAAAC TCAAAGCAAA AAGGATTGCA GCAGTGGAAA AGAAGAAGCA GTGTTTAGAA ATGAAGAGTC TATCTACCAA GGAAGCAAGT GGTGACCTTC AATGGCATGC AGATTTTGCT AGTATTCCAG CAGTTCTCAG TGAATCTAAC AAGGAGCCAA GGCCTGAAGA GTTTGGAAAT GAGTTGGGCA TTAAACAGCC AGTACAACAT GTTGCTTCTG AGGAGCAGGA AGGAGTTCAA GATGATGCCA AGGCTGATGC AAATGATATG AATGTTTCTT TTGATAAGGG GAAATCAGAA GATTCTTTTG GCACAATTAA TGgtagaaaa aatgctggtg atggtgtcaa cagtggagat aaaattgaat ctcctagtgg tttagcagaa agaacattgg ctaaacctac cactaaggga tgcagtaagc agcgtggccg tgattcttct aatgcaagag GGAACAGGAA TAAAAGAACA GAAGAGGAAA ATGTGCCTGG ATTGATTACC GTGGCTCCTG AGTCAGAAGA TGAGACCCCA TTTGTAGATG GAAACCAAGC AGAGGGTGGT GCATTGTGGG ATATTTTCCG ACGGGAAGAT GTGAGCAAAC TACATGATTA TCTAATGAAA CATGCAGACG AGTTTAGGCA TTGCAACTTT GAGACAGTGA AGCAGgtaac tggtacttgt tatttgtcca taaaagtatt aagtatgctg taccatctgg catccaattt catgttgaag agctatcact tattcacttt ttggcagGTT ACTCATCCTA TACATGATCA GTGTTTTTAT CTAACAAATG AGCACAAGAG AAAGCTTAAG GAAGAATATG gttagttaat aactttatgt ctttttgaac ttgaactttg ccctagtgat atttcctggt tttgatgctt cttttgtagG AATTGAGCCT TGGACATTTG AACAGAAGCT AGGTGAGGCA GTATTTATTC CAGCAGGATG TCCCCACCAG GTTAGAAATT TGAAGgtatg acaggacagg acatataaac agctgtccgt ccccactgtc atcagtgacg tgctccttaa tcgaattagc tgctaatcag tggcaccttt ttattgggca gTCTTGCATA AAGGTTGCAC TTGACTTTGT TTCTCCGGAG AATGTGAGAG AGTGCATCAG GTTAACAGAA CAATTCCGTC TGCTTCCGAA GTGGCATAGG GTGAATGAAG ATAAATTGGA Ggtctgtcac ttcgtccatg ctcctgtaac atttgctaat tctttttatg tgatcgtaaa tgaagtatta ttctgtttat tatgttgatt tttgttggcc ccagcttctg tatcctctct atttgggcat tcttatcttt ctagactcat taatctagac atttaaattt taaattatgt gtcttgtcga tctgaaatgg cagGTTAAGA AGATAGCTCT TCATGCACTC AATCAAGCGA TTAAAGATAT CTCTGATGAA TCATCTAATa gcaacgaaag gtttgttgtg ataactcttt atgcaagctg tttattcctt gtgatcataa atagtgcatg cataatcatc tatgtttgat tatggtgaga ccccatgtat caacattttt ctagcatccc tgttttagca caaacttttg gatggttgct cgactcaaaa tgtgtaggac taattggttg cctgcctttt ttttttaaaa aaaaaggttg cctgcatact tttaaagttg cattacctgg acatagagtg gtttcttttt ttcccataat gttgtctctg gattcatcca tttgtctagg tgctcttgtt aaatcacaat tgtagaatgt gtggtgttct gcataaatgt atctggtcca tcagggaaga tatctgaatg gagaagtaat gttacaggag tgtttcttgg ttctactgat tgccttctga acatgaatgt atcatgctgt caaattgtgg ttcacattta agctgctgct gctgct |
Transcript Splice Model
500-606 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 |
>JMJ2622 | Sorghum bicolor | transcript sequence | JmjD1 Group
ATGTGCCATC AGTGCCAGAG GAATGATAAC GGAAGAGTTG TACGGTGCCA AGGCTGTGTC AAAGAAAAGA GAAAATACAG ATACTGTGTG AAGTGCATTA ATCGCTGGTA TCCACATTTA TCAGAGGACG ATTTTGCGAA CAATTGCCCA GTTTGTCAAA AAAATTGCAA TTGTAAGGCC TGTCTGCGGG GAGACATAAC CCGAACCAAC GCCAAAACTG AAGGATATAG TGTATCTGAA CAAGATAAAA TTCAATTCTC TATGCGTATC GTGCGCTTTT TGCTCCCTTG GCTGAAAGAA TTCCACCAAG AGCAGATGCA AGAGAAAAGT GCTGAGGCTG CAACTAAAGT AGGGATTGAT GCAGGCAAAC TAGAGGTCCC TCTAACCATT TGTGGAAAAA ATGAACGGAT ATACTGTGAC AACTGCAGGA CATCTATTGT TGACTTCCAC AGAACCTGCA ATAAATGTAA CTATGATCTC TGCCTCCGGT GCTGCCGGGA GCTTCGTCGA GGCCTTGTTC CTGGTAATGG TGTCAAGGTT GATGGTGGAG GCAAGGAAGA TTTGCAATTG GGAGTTAGTC ATGATAAAAT TGTAAGTAAA GGGCCATCTG ATGGACAGAA TGGCATGTTA ATAGATAGTG TAGTTCCTGC TGACAAGAGC ACTTCTAGCT TGAGAGAGTG GAGTGTGAAT AACGATGGAA CCATACCTTG CCCACCAAAT GCATTTGGTG GTTGTGGGAG CTCTCTTCTT GAACTTAAGT GCTTGTTCGA AGAGACGTTT ATTGCTGAAT TACTGGAGAA GGCCAATTCA GCGGTCAATA ATGGAATGGA GGTGAAGATG GAAGGATCAA AATGTTCCTG CTTCACTGAA TCCGGTGACA TAGATGATGG TATATCGCGG AAAACAGCTT GCAGAGAGAA TTCCTGTGAT AACTACATAT ATTGCCCAAC CGCTACTGAT GTCCAAAATG GAAGTTTAGA TCATTTCCAG GAGCATTGGT TGAAGGGTGA ACCTGTAATT GTCCGTGATA CGCTTGCATT GACTTCTGGA TTAAGCTGGG AACCGATGGT TATGTGGCGC GCCTTACGAG AAAAGAGAGA CAAAGTTGAG AGGCTCTCAG TTCTTGCTCT TGAATGCTTG GGTTGGTGTG AGGTTGATGT AAATATTCAT ATGTTTTTTG CGGGGTATTC ACGTGGGCTT GTTGGTCCAG ACGATTTGCC TCTGTTACTT AAGCTTAAAG ATTGGCCACC ACATAGTTCT TTTGAGGAGC GGCTGCCAAG ACATGGTGCA GAGTTTATGT CTGCGTTGCC ATTTCGCGAA TACACAGATC CTAAATGTGG TCCTCTTAAT CTGGCAGTAA AGCTTCCCAA GGGTGTTAAT AAGCCAGACC TTGGTCCAAA GACTTATATT GCATATGGTG TTTCCAAAGA GTTGGGAATT GGTGATTCTG TCACCAAGCT TCACTGCGAT ATGTCTGATG CGGTGAATAT CCTCACACAT ACTGATGAAA TAAAACTCAA AGCAAAAAGG ATTGCAGCAG TGGAAAAGAA GAAGCAGTGT TTAGAAATGA AGAGTCTATC TACCAAGGAA GCAAGTGGTG ACCTTCAATG GCATGCAGAT TTTGCTAGTA TTCCAGCAGT TCTCAGTGAA TCTAACAAGG AGCCAAGGCC TGAAGAGTTT GGAAATGAGT TGGGCATTAA ACAGCCAGTA CAACATGTTG CTTCTGAGGA GCAGGAAGGA GTTCAAGATG ATGCCAAGGC TGATGCAAAT GATATGAATG TTTCTTTTGA TAAGGGGAAA TCAGAAGATT CTTTTGGCAC AATTAATGGG AACAGGAATA AAAGAACAGA AGAGGAAAAT GTGCCTGGAT TGATTACCGT GGCTCCTGAG TCAGAAGATG AGACCCCATT TGTAGATGGA AACCAAGCAG AGGGTGGTGC ATTGTGGGAT ATTTTCCGAC GGGAAGATGT GAGCAAACTA CATGATTATC TAATGAAACA TGCAGACGAG TTTAGGCATT GCAACTTTGA GACAGTGAAG CAGGTTACTC ATCCTATACA TGATCAGTGT TTTTATCTAA CAAATGAGCA CAAGAGAAAG CTTAAGGAAG AATATGGAAT TGAGCCTTGG ACATTTGAAC AGAAGCTAGG TGAGGCAGTA TTTATTCCAG CAGGATGTCC CCACCAGGTT AGAAATTTGA AGTCTTGCAT AAAGGTTGCA CTTGACTTTG TTTCTCCGGA GAATGTGAGA GAGTGCATCA GGTTAACAGA ACAATTCCGT CTGCTTCCGA AGTGGCATAG GGTGAATGAA GATAAATTGG AGGTTAAGAA GATAGCTCTT CATGCACTCA ATCAAGCGAT TAAAGATATC TCTGATGAAT CATCTAAT |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 |
>JMJ2622 | Sorghum bicolor | orf sequence | JmjD1 Group
ATGTGCCATC AGTGCCAGAG GAATGATAAC GGAAGAGTTG TACGGTGCCA AGGCTGTGTC AAAGAAAAGA GAAAATACAG ATACTGTGTG AAGTGCATTA ATCGCTGGTA TCCACATTTA TCAGAGGACG ATTTTGCGAA CAATTGCCCA GTTTGTCAAA AAAATTGCAA TTGTAAGGCC TGTCTGCGGG GAGACATAAC CCGAACCAAC GCCAAAACTG AAGGATATAG TGTATCTGAA CAAGATAAAA TTCAATTCTC TATGCGTATC GTGCGCTTTT TGCTCCCTTG GCTGAAAGAA TTCCACCAAG AGCAGATGCA AGAGAAAAGT GCTGAGGCTG CAACTAAAGT AGGGATTGAT GCAGGCAAAC TAGAGGTCCC TCTAACCATT TGTGGAAAAA ATGAACGGAT ATACTGTGAC AACTGCAGGA CATCTATTGT TGACTTCCAC AGAACCTGCA ATAAATGTAA CTATGATCTC TGCCTCCGGT GCTGCCGGGA GCTTCGTCGA GGCCTTGTTC CTGGTAATGG TGTCAAGGTT GATGGTGGAG GCAAGGAAGA TTTGCAATTG GGAGTTAGTC ATGATAAAAT TGTAAGTAAA GGGCCATCTG ATGGACAGAA TGGCATGTTA ATAGATAGTG TAGTTCCTGC TGACAAGAGC ACTTCTAGCT TGAGAGAGTG GAGTGTGAAT AACGATGGAA CCATACCTTG CCCACCAAAT GCATTTGGTG GTTGTGGGAG CTCTCTTCTT GAACTTAAGT GCTTGTTCGA AGAGACGTTT ATTGCTGAAT TACTGGAGAA GGCCAATTCA GCGGTCAATA ATGGAATGGA GGTGAAGATG GAAGGATCAA AATGTTCCTG CTTCACTGAA TCCGGTGACA TAGATGATGG TATATCGCGG AAAACAGCTT GCAGAGAGAA TTCCTGTGAT AACTACATAT ATTGCCCAAC CGCTACTGAT GTCCAAAATG GAAGTTTAGA TCATTTCCAG GAGCATTGGT TGAAGGGTGA ACCTGTAATT GTCCGTGATA CGCTTGCATT GACTTCTGGA TTAAGCTGGG AACCGATGGT TATGTGGCGC GCCTTACGAG AAAAGAGAGA CAAAGTTGAG AGGCTCTCAG TTCTTGCTCT TGAATGCTTG GGTTGGTGTG AGGTTGATGT AAATATTCAT ATGTTTTTTG CGGGGTATTC ACGTGGGCTT GTTGGTCCAG ACGATTTGCC TCTGTTACTT AAGCTTAAAG ATTGGCCACC ACATAGTTCT TTTGAGGAGC GGCTGCCAAG ACATGGTGCA GAGTTTATGT CTGCGTTGCC ATTTCGCGAA TACACAGATC CTAAATGTGG TCCTCTTAAT CTGGCAGTAA AGCTTCCCAA GGGTGTTAAT AAGCCAGACC TTGGTCCAAA GACTTATATT GCATATGGTG TTTCCAAAGA GTTGGGAATT GGTGATTCTG TCACCAAGCT TCACTGCGAT ATGTCTGATG CGGTGAATAT CCTCACACAT ACTGATGAAA TAAAACTCAA AGCAAAAAGG ATTGCAGCAG TGGAAAAGAA GAAGCAGTGT TTAGAAATGA AGAGTCTATC TACCAAGGAA GCAAGTGGTG ACCTTCAATG GCATGCAGAT TTTGCTAGTA TTCCAGCAGT TCTCAGTGAA TCTAACAAGG AGCCAAGGCC TGAAGAGTTT GGAAATGAGT TGGGCATTAA ACAGCCAGTA CAACATGTTG CTTCTGAGGA GCAGGAAGGA GTTCAAGATG ATGCCAAGGC TGATGCAAAT GATATGAATG TTTCTTTTGA TAAGGGGAAA TCAGAAGATT CTTTTGGCAC AATTAATGGG AACAGGAATA AAAGAACAGA AGAGGAAAAT GTGCCTGGAT TGATTACCGT GGCTCCTGAG TCAGAAGATG AGACCCCATT TGTAGATGGA AACCAAGCAG AGGGTGGTGC ATTGTGGGAT ATTTTCCGAC GGGAAGATGT GAGCAAACTA CATGATTATC TAATGAAACA TGCAGACGAG TTTAGGCATT GCAACTTTGA GACAGTGAAG CAGGTTACTC ATCCTATACA TGATCAGTGT TTTTATCTAA CAAATGAGCA CAAGAGAAAG CTTAAGGAAG AATATGGAAT TGAGCCTTGG ACATTTGAAC AGAAGCTAGG TGAGGCAGTA TTTATTCCAG CAGGATGTCC CCACCAGGTT AGAAATTTGA AGTCTTGCAT AAAGGTTGCA CTTGACTTTG TTTCTCCGGA GAATGTGAGA GAGTGCATCA GGTTAACAGA ACAATTCCGT CTGCTTCCGA AGTGGCATAG GGTGAATGAA GATAAATTGG AGGTTAAGAA GATAGCTCTT CATGCACTCA ATCAAGCGAT TAAAGATATC TCTGATGAAT CATCTAAT |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 |
>JMJ2622 | Sorghum bicolor | protein sequence | JmjD1 Group
MCHQCQRNDN GRVVRCQGCV KEKRKYRYCV KCINRWYPHL SEDDFANNCP VCQKNCNCKA CLRGDITRTN AKTEGYSVSE QDKIQFSMRI VRFLLPWLKE FHQEQMQEKS AEAATKVGID AGKLEVPLTI CGKNERIYCD NCRTSIVDFH RTCNKCNYDL CLRCCRELRR GLVPGNGVKV DGGGKEDLQL GVSHDKIVSK GPSDGQNGML IDSVVPADKS TSSLREWSVN NDGTIPCPPN AFGGCGSSLL ELKCLFEETF IAELLEKANS AVNNGMEVKM EGSKCSCFTE SGDIDDGISR KTACRENSCD NYIYCPTATD VQNGSLDHFQ EHWLKGEPVI VRDTLALTSG LSWEPMVMWR ALREKRDKVE RLSVLALECL GWCEVDVNIH MFFAGYSRGL VGPDDLPLLL KLKDWPPHSS FEERLPRHGA EFMSALPFRE YTDPKCGPLN LAVKLPKGVN KPDLGPKTYI AYGVSKELGI GDSVTKLHCD MSDAVNILTH TDEIKLKAKR IAAVEKKKQC LEMKSLSTKE ASGDLQWHAD FASIPAVLSE SNKEPRPEEF GNELGIKQPV QHVASEEQEG VQDDAKADAN DMNVSFDKGK SEDSFGTING NRNKRTEEEN VPGLITVAPE SEDETPFVDG NQAEGGALWD IFRREDVSKL HDYLMKHADE FRHCNFETVK QVTHPIHDQC FYLTNEHKRK LKEEYGIEPW TFEQKLGEAV FIPAGCPHQV RNLKSCIKVA LDFVSPENVR ECIRLTEQFR LLPKWHRVNE DKLEVKKIAL HALNQAIKDI SDESSN |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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