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HMGB21202 (Arabidopsis lyrata) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 |
>HMGB21202 | Arabidopsis lyrata | genomic sequence | Arid Domain Group
attgattaca ttggaaagaa acagatgtga ctaatttcga ctgctcgtaa gcttaaaatc taaagtaggt ggggtgcaat aatatcagta ttaataatct gtgaaaaaag taattagtag tatcagacaa aatactaagc aacatcattc aaaacgcctc gaaaataaaa acaataattt gaaagcaagc aaatatacac aattactaca aagtataaaa ttttaaattt ccttatatct atgtggtata tattaaagac acaaaaagaa agaaaatgac aaatcctcac gtccgttact tttaaatcct tagcaaaaaa aaaaattaaa tttcatattt ctatttcttt gtgatttaat cacaaatctt atcttgaatc gttatctttc tcttctttcc ttaaaccaaa accaaaaaag agagaccaga caaaaaaaaa aacacacaca acccctcaca acaacaaaaa aacctctact aattgtttct ctctttaacg ATGTCATCGG ACAACGAATC GACACCGTCT CAGGCGACGG TAGAAATGAC GGCGACGTCT CCGGCGAAGA TTAAAGAGTA TCCAGAACCA TTGGCTTCAC ATGAAGTTGT CGTTAAAGAT TCTTCTGTCT TCTGGGATAC TCTCAGGCGA TTTCACTCAA TTATGTCCAC TAAGTTCATg taaccattat tcctcttgtt cttacttaat aaatttagtt ttcgtcattt cttttattta tttttgtatg atatatacaa gGATTCCTGT GATTGGAGGA AAAGAACTGG ATTTGCATGT TTTGTATGTG GAAGTCACGA GGAGGGGAGG TTACGAAAAG gtcaacactt ttgttttctt tttcaataca caattttttt tactttatgg taatttatta tcatattctt atatgttgag tttgttttga aaatgcatgt aaattaaaag GTAGTCGCAG AGAAAAAATG GAGGGAAGTT GGAGGAGTGT TTAGATTCTC TGCGACAACA ACAAGTGCTT CGTTTGTCTT AAGGAAACAT TATCTCAATC TTCTCTTCCA TTACGAACAA GTTCATCTCT TCACTGCTCG TGGTCCACTT CTTCATCCCA CAGgtttttt tttttctaac cttcttcaat tgattacttt ttaagtttta aatatatata ggacacaagc attataatcc tataggttat atttttcaat tatcatatat ttatttctac ggagattctt taattcaacc gcttgataaa tgctaatcaa tgaatcatga gatgcttccc atattgtctt taatgcccta agactagaaa tttcaattct ttgttaacca ttaaggatag tctaaaaggc ttgaaactag gataaaataa taaaaatgaa attccaaaat gtgatgaaga catgggttca aatcgtggta cacattctta ctacaacgtg ggagttcaac gattgtatat acccgaattt tttgtctggt aaagatgtat acctggatta tatttatcag ttttatcttt atggttattg taattatgtt aatatcttgg aactagaaat tatttggcga cgactattta tgtcacatat aagtatcaat tttgcagCTA CATTTCATGC CAATCCATCA ACGAGCAAAG AAATGGCTCT CGTCGAATAT ACTCCTCCGA GTATAAGATA TAATAATACT CATCATCCTT CTCAAGgttc gtacgtatta tctactcatc ttttttcttt gttttatatg atcatttttt atgacaaagt atgattaagg tcttagttaa tgattatttt ttattttttt ggtaaaatgt gaagtattag ttaatgatta tatttatgtg taacttatat ttaggggcat tagctatatg tacttatcgt aaattgtttg tgtttatctc aatacttttc aaatatagtc tagactagaa ttataatggt cccactgtca ttatgtttga tgcaaattta tttggatttt gttggataat aaacctaaga tgtggaccaa accggaagct tatacgattt ggttcacata caagaaattt ttataagata atgtatttaa gttttgctta tgatacatgt gatatttaat acatggcaca gGTTCGTCGA GTTTCACAGC CATTGGTACA ATAGAAGGCA AATTCGATTG TGGTTATCTG GTAAAAGTAA AGTTGGGCTC AGAAATTCTT AACGGCGTGC TTTATCATTC GGCCCAGCCC GGCCCATCAT CATCTCCAAG CGCTGATCTA AACGGTGCCG TTGTACCTTA TGTTGAAACT GGGAGGAGGC GACGTCGTTT AGGTAAAAGA CGAAGAAGCA GACGCAGAGA AGACCCAAAT TACCCGAAAC CAAACCGGAG CGGTTACAAT TTCTTCTTTG CAGAGAAGCA TTGTAAGCTC AAGTCTCTTT ATCCCAACAA GGAAAGAGAG TTTACGAAAA TTATCGGCGA ATCGTGGAGC AATCTCTCTA CTGAAGAACG AATGgtaaca aattatctta taaaccggga ccggttaaga gatgaaaata gattttgtag taaaccgata actgaaccga gttggtttat cgtttgcagG TTTATCAGGA CATTGGATTG AAGGATAAGG AGAGGTATCA GAGGGAGTTG AATGAGTACA GAGAAACGTT AAGGCTCAGG GATGGTAACA TGACAAACGA CAAGGCGTTT TAGgtgattt taggcgttaa gtcgatttgt ttgtaggtcg tttctctttt ttaagatcgg acgtctcgcc gtttattttt ctagcttatc gtagtagttg gccatgtgaa aactaggctt agccgtgtgt ttggatttta tcggacagtt cctttctctt tttatgtttt ttctgaattt tagattttct actgaggtta tattttcttc aattcgatcg attcgttgat tagtaaacta acaaaacacc acaagaacta tgaataaaaa cttggaattt tcaaagtctc ttcctaagct tatctagttc tgcaacgtta atcaaaacaa tcaaataatg ccacgtcagc tcgcataaca tctaggataa ccaatcacag caatcccatg cagataacgc tctcgcttta tctaaccaaa taaacctcac aacccccttt tgggaaaaaa tcccacaaaa tttcaattca ttacgagtga tcccaaaaaa taaagaaaat gg |
Transcript Splice Model
501-679 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 |
>HMGB21202 | Arabidopsis lyrata | transcript sequence | Arid Domain Group
ATGTCATCGG ACAACGAATC GACACCGTCT CAGGCGACGG TAGAAATGAC GGCGACGTCT CCGGCGAAGA TTAAAGAGTA TCCAGAACCA TTGGCTTCAC ATGAAGTTGT CGTTAAAGAT TCTTCTGTCT TCTGGGATAC TCTCAGGCGA TTTCACTCAA TTATGTCCAC TAAGTTCATG ATTCCTGTGA TTGGAGGAAA AGAACTGGAT TTGCATGTTT TGTATGTGGA AGTCACGAGG AGGGGAGGTT ACGAAAAGGT AGTCGCAGAG AAAAAATGGA GGGAAGTTGG AGGAGTGTTT AGATTCTCTG CGACAACAAC AAGTGCTTCG TTTGTCTTAA GGAAACATTA TCTCAATCTT CTCTTCCATT ACGAACAAGT TCATCTCTTC ACTGCTCGTG GTCCACTTCT TCATCCCACA GCTACATTTC ATGCCAATCC ATCAACGAGC AAAGAAATGG CTCTCGTCGA ATATACTCCT CCGAGTATAA GATATAATAA TACTCATCAT CCTTCTCAAG GTTCGTCGAG TTTCACAGCC ATTGGTACAA TAGAAGGCAA ATTCGATTGT GGTTATCTGG TAAAAGTAAA GTTGGGCTCA GAAATTCTTA ACGGCGTGCT TTATCATTCG GCCCAGCCCG GCCCATCATC ATCTCCAAGC GCTGATCTAA ACGGTGCCGT TGTACCTTAT GTTGAAACTG GGAGGAGGCG ACGTCGTTTA GGTAAAAGAC GAAGAAGCAG ACGCAGAGAA GACCCAAATT ACCCGAAACC AAACCGGAGC GGTTACAATT TCTTCTTTGC AGAGAAGCAT TGTAAGCTCA AGTCTCTTTA TCCCAACAAG GAAAGAGAGT TTACGAAAAT TATCGGCGAA TCGTGGAGCA ATCTCTCTAC TGAAGAACGA ATGGTTTATC AGGACATTGG ATTGAAGGAT AAGGAGAGGT ATCAGAGGGA GTTGAATGAG TACAGAGAAA CGTTAAGGCT CAGGGATGGT AACATGACAA ACGACAAGGC GTTTTAG |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 |
>HMGB21202 | Arabidopsis lyrata | orf sequence | Arid Domain Group
ATGTCATCGG ACAACGAATC GACACCGTCT CAGGCGACGG TAGAAATGAC GGCGACGTCT CCGGCGAAGA TTAAAGAGTA TCCAGAACCA TTGGCTTCAC ATGAAGTTGT CGTTAAAGAT TCTTCTGTCT TCTGGGATAC TCTCAGGCGA TTTCACTCAA TTATGTCCAC TAAGTTCATG ATTCCTGTGA TTGGAGGAAA AGAACTGGAT TTGCATGTTT TGTATGTGGA AGTCACGAGG AGGGGAGGTT ACGAAAAGGT AGTCGCAGAG AAAAAATGGA GGGAAGTTGG AGGAGTGTTT AGATTCTCTG CGACAACAAC AAGTGCTTCG TTTGTCTTAA GGAAACATTA TCTCAATCTT CTCTTCCATT ACGAACAAGT TCATCTCTTC ACTGCTCGTG GTCCACTTCT TCATCCCACA GCTACATTTC ATGCCAATCC ATCAACGAGC AAAGAAATGG CTCTCGTCGA ATATACTCCT CCGAGTATAA GATATAATAA TACTCATCAT CCTTCTCAAG GTTCGTCGAG TTTCACAGCC ATTGGTACAA TAGAAGGCAA ATTCGATTGT GGTTATCTGG TAAAAGTAAA GTTGGGCTCA GAAATTCTTA ACGGCGTGCT TTATCATTCG GCCCAGCCCG GCCCATCATC ATCTCCAAGC GCTGATCTAA ACGGTGCCGT TGTACCTTAT GTTGAAACTG GGAGGAGGCG ACGTCGTTTA GGTAAAAGAC GAAGAAGCAG ACGCAGAGAA GACCCAAATT ACCCGAAACC AAACCGGAGC GGTTACAATT TCTTCTTTGC AGAGAAGCAT TGTAAGCTCA AGTCTCTTTA TCCCAACAAG GAAAGAGAGT TTACGAAAAT TATCGGCGAA TCGTGGAGCA ATCTCTCTAC TGAAGAACGA ATGGTTTATC AGGACATTGG ATTGAAGGAT AAGGAGAGGT ATCAGAGGGA GTTGAATGAG TACAGAGAAA CGTTAAGGCT CAGGGATGGT AACATGACAA ACGACAAGGC GTTTTAG |
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1 61 121 181 241 301 |
>HMGB21202 | Arabidopsis lyrata | protein sequence | Arid Domain Group
MSSDNESTPS QATVEMTATS PAKIKEYPEP LASHEVVVKD SSVFWDTLRR FHSIMSTKFM IPVIGGKELD LHVLYVEVTR RGGYEKVVAE KKWREVGGVF RFSATTTSAS FVLRKHYLNL LFHYEQVHLF TARGPLLHPT ATFHANPSTS KEMALVEYTP PSIRYNNTHH PSQGSSSFTA IGTIEGKFDC GYLVKVKLGS EILNGVLYHS AQPGPSSSPS ADLNGAVVPY VETGRRRRRL GKRRRSRRRE DPNYPKPNRS GYNFFFAEKH CKLKSLYPNK EREFTKIIGE SWSNLSTEER MVYQDIGLKD KERYQRELNE YRETLRLRDG NMTNDKAF |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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