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NRPDB21203 (Arabidopsis lyrata) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 4021 4081 4141 4201 4261 4321 4381 4441 |
>NRPDB21203 | Arabidopsis lyrata | genomic sequence | RNA Polymerase IV Small Subunit
caaagcacac taacacgaga acaacataag gacatacccg tcatttcaac aaacgacact caatttcttc actccctcgt caactgcttc gcttcgttta accatcgaaa aagtgagcca agggttttga ctctcttcgt tttctacggc gaaatctctc cgattttccg gcgacgttta ctctgccttc ctccaacacc gccgttttac tccatcgtgc cagcttaagc aatcaaggta cccattttag gtattacgct ttgattctgc ttttaagcat tggaaattcc ggagactata tgctttagag aatgattcgg ttctagggga aagtttttga ttgcgtgttt gtattcgtat gatgcatttt cgtggttcat gattttcacg gcttcttaat ctttgtttgg ggtttttttt ttgtttcagt gtgttttgag gtataccaga aaagatggac tatattgttg aacggaatta attttctgtt accagaaaag ATGGACATTG ATGAGATGGA TATTGAAGAG ATCGAGGCTA CTGCGGAGAT CAATCTATCT GAGCTAGGAG AAAGTTTTCT CCAGAGTTTC TGCAAGAAAG CTGCAACTTC CTTCTTTGAT AAGTATGGAC TTATAAGTCA TCAGCTCAAT TCCTACAACT TCTTCATTCA ACACGGGCTT CAGGATGTGT TTGAATCCTT TGGTGATATG CTTGTGGAAC CGTCGTTTGA TGTGATAAAG AAGAAGGATA ACGATTGGAG ATACGCTACG GTGAAATTCG GAAAAGTCAC TGTGGAGAAG CCCACTTTCT TTTCCGATGA CAAGGAGCTT GAGTTTCTCC CATGGCATGC CAGGCTTCAG AACATGACAT ATTCAGCAAG GATCAAAGTC AATGTCCAAG TTGAGgtaac aaaatctttg tcgaaaaatt aagtaagctt gtctggattt gataaatgat ttcccttgct tgaaaactca gaaagaccag ttaactatca ctttttagtt caacattatg caatatgtct atgtagtcga gagtaagctc attttttgat gtttctacta gactcttgct gacacatata tgaagatgtt gacatacact gaggttcctg tcatagattt ctcaaactta tcaaaacctt taacttgcca taaaataata tattaagggt tatggcacat atatgtctgg aaactggttt cactcttttt ggctttacaa gttttctatt cttggatttg gttccttatt tgcattcgct ggatttctta cgtgagcaaa atatctagta aaagagattt attacattta cattttcgtg tgaagtagag gtatgtttca ggcttcgttg tttttaagat tgatgatttt gtctgctccc aatctttaga tgtttcttgc tttttttccg ggccaaaatt tgaattgtga ttactttttc ttgtagtagt gggtgctcaa acgaaataag ctttagtttg tttcatttta aagattggat gcaataaaag aaaaacatct tcagcttttt atttatttag ttcttcccca ttccctcact gtgctttaat ttgagtgttt catgcttgtg tgcaatgact cttgtactat caaacttttg atgctgtttc tgttttgctg tccatgtatc ttattcttat aaatgtagtt tattgtctaa ctgcctcttc actttataaa ttcactagGT GTTCATAAAA ACTGTTGTTA AAAGCGACAA ATTCAAGACG GGACAAGACG AATATGTCGA GAAGAAGATA CTTGAGGTCA AAAAGCAGGA CATTCTAATT GGTAGCATTC CTGTCATGGT GAAATCTGTC CTTTGCAAAA CAAGCGAGAA AGGAAAAGAA AACTGCAGAA AGGGGGATTG TGCCTTTGAT CAGGGTGGCT ATTTTGTGAT AAAGGGGGCT GAGAAGgtta gttaaactaa tacatacata tatgcatatt gccattcaat acttaaaata aactttattt tctaagccaa aacggatttt gtttgtcagc aatttataca acacaaacaa gagtataatt acaattttct atcatcagat aatagtagtt atcagcaaaa aagatgttac aaattagaca ataacctatt tggttcattt tattttccta atggagatgg ttaagaaagt aagaaactta acttatttat gactttatat gcttaaacat acatacaaca aaacctttat caacacaaac acatactgaa ggaaaggaaa aacaattcaa gtacttcaaa cttcattaaa tactaaacaa attaatcgtg tttgggatct tttttcatag ccactgtcat gggatttcta ttttgaacta ttttagtgga aattagtttt ctcgccgttt tcctttgctc agcaggctcc gtctttgctt gtcctttatg catactttat tagcatcaaa gatatagact ttttctttcc tttctggctt gaccatgagg ccatgactat tcaaatctta caggaagcgt tctttgcagt cataggctct gggacagatg acttgactct gatatatact gcaaaaaata ttttcaagtt gttatacaac ttcctaacgt gattatattg tgttttgcag GTGTTTATAG CTCAAGAACA GATGTGCACA AAGAGACTGT GGATTTCTAA CTCACCATGG ACAGTCTCTT TCAGGTCCGA AAATAAAAGA AATAGGTTCA TTGTGCGCCT CTCGGAGAAT GAGAAATCAG AAGACTATAA GAAAAGGGAG AAAGTACTGA CAGTGTACTT CTTGTCGACT GAGATTCCAG TCTGGCTCCT GTTCTTTGCG CTGGGTGTTT CGTCAGACAA AGAAGCCATG AATCTGATTG CTTTTGATGG TGATGATGCA AGCATTACCA ACAGTCTCAT AGCTTCTATC CATGAAGCTG ATGCAGTTTG TGAAGCTTTT CGCTGTGGGA ACAATGCTTT AAGTTATGTT GAACAGCAGA TCAAACCTTG GAGgcctgga tgacaggcaa gtatctctga caagcaagta tctctgacag gcaaaataga agtgaaagcc ctggtacaga gatacttgcc tgtcatatat ctctgtaaga ctaaaaaact aagaagtttc caggcctcca agtacagaga tatatgacag gcaagtatct ctgacaggca aaatagaagt gagcatgagt tatatgacag gcaagtatct ctgtaagact aaaaaactaa gaagttcaat gttctctggt tgattaatac ttctattgtt cctgaaaaac gtctagagaa tacacaaaaa taggctcaaa agcaatgtac cagtatataa attagttaga ggattgatgc tgtgagcctt gtgatttatg tctgattcat ttaacctttc ttagattatt gttgattctt gagtcctgat tccattacca atggtaaata tttgtggtta gGGCCGGCTT TTCAAGATGG GGAAACGAAA GGGTCTACAA TGGTAGATCG GGTGAGATGA TGCGTTCTCT GATATTCATG GGCCCAACTT TCTACCAGCG ACTTGTCCAC ATGTCAGAGG ACAAAGTCAA GTTCAGGAAC ACCGGACCAG TCCACCCGCT CACACGCCAG CAAGTCGCAG ACAGGAAGAG GTTTGGCGGG ATAAGGTTTG GAGAAATGGA GCGAGACTGC CTAATAGCTC ACGGTGCATC TGCTAATCTG CACGAGCGTC TCTTCACTCT AAGTGACTCT TCTCAGATGC ACATCTGCAG AAAATGTAAG ACCTATGCGA ATGTGATCGA GAGGACTCCA AGCAGTGGAA GAAAGATCAG AGGGCCATAT TGTAGAGTCT GCGTATCCTC AGACCATGTG GTTAGAGTCT ATGTTCCGTA TGGAGCTAAA CTTCTGTGTC AGGAGCTGTT CAGCATGGGC ATCACTCTCA ACTTCGACAC CAAGCTCTGC TGAttacccc tctttattat gtaaaggtct taatgcctta agaccatgtt atgtgtagtt tgcttccatc ccggttctgg ttagtagcat tggttttggt ttggttgatt cggtaaggtt atccgaaccg aagaaatcgt taaaccaagc cacggaacta acccgtaaat gttgcttttg tgagatttga ctctttaacc aactgttaag ctgttttttt tttttgtcaa ctggtgtatt attattatta ataaaaccaa agaaactata caatgcttgg ttatgagtaa accaagacaa acataggcca ttatttttta ctggacctga aaatgaaaac caagcccaac aaagtaaacc cttaagcaaa gataattaaa acgcacgatc acatctctca acttggaagc ttgccgcaca gatgcttatt acatcgaact tcatcgcttt gtgaacacgc gtccagctcg tcatcatcgt ctagtctacc gccggtttgg aa |
Transcript Splice Model
501-905 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 |
>NRPDB21203 | Arabidopsis lyrata | transcript sequence | RNA Polymerase IV Small Subunit
ATGGACATTG ATGAGATGGA TATTGAAGAG ATCGAGGCTA CTGCGGAGAT CAATCTATCT GAGCTAGGAG AAAGTTTTCT CCAGAGTTTC TGCAAGAAAG CTGCAACTTC CTTCTTTGAT AAGTATGGAC TTATAAGTCA TCAGCTCAAT TCCTACAACT TCTTCATTCA ACACGGGCTT CAGGATGTGT TTGAATCCTT TGGTGATATG CTTGTGGAAC CGTCGTTTGA TGTGATAAAG AAGAAGGATA ACGATTGGAG ATACGCTACG GTGAAATTCG GAAAAGTCAC TGTGGAGAAG CCCACTTTCT TTTCCGATGA CAAGGAGCTT GAGTTTCTCC CATGGCATGC CAGGCTTCAG AACATGACAT ATTCAGCAAG GATCAAAGTC AATGTCCAAG TTGAGGTGTT CATAAAAACT GTTGTTAAAA GCGACAAATT CAAGACGGGA CAAGACGAAT ATGTCGAGAA GAAGATACTT GAGGTCAAAA AGCAGGACAT TCTAATTGGT AGCATTCCTG TCATGGTGAA ATCTGTCCTT TGCAAAACAA GCGAGAAAGG AAAAGAAAAC TGCAGAAAGG GGGATTGTGC CTTTGATCAG GGTGGCTATT TTGTGATAAA GGGGGCTGAG AAGGTGTTTA TAGCTCAAGA ACAGATGTGC ACAAAGAGAC TGTGGATTTC TAACTCACCA TGGACAGTCT CTTTCAGGTC CGAAAATAAA AGAAATAGGT TCATTGTGCG CCTCTCGGAG AATGAGAAAT CAGAAGACTA TAAGAAAAGG GAGAAAGTAC TGACAGTGTA CTTCTTGTCG ACTGAGATTC CAGTCTGGCT CCTGTTCTTT GCGCTGGGTG TTTCGTCAGA CAAAGAAGCC ATGAATCTGA TTGCTTTTGA TGGTGATGAT GCAAGCATTA CCAACAGTCT CATAGCTTCT ATCCATGAAG CTGATGCAGT TTGTGAAGCT TTTCGCTGTG GGAACAATGC TTTAAGTTAT GTTGAACAGC AGATCAAACC TTGGAGGGCC GGCTTTTCAA GATGGGGAAA CGAAAGGGTC TACAATGGTA GATCGGGTGA GATGATGCGT TCTCTGATAT TCATGGGCCC AACTTTCTAC CAGCGACTTG TCCACATGTC AGAGGACAAA GTCAAGTTCA GGAACACCGG ACCAGTCCAC CCGCTCACAC GCCAGCAAGT CGCAGACAGG AAGAGGTTTG GCGGGATAAG GTTTGGAGAA ATGGAGCGAG ACTGCCTAAT AGCTCACGGT GCATCTGCTA ATCTGCACGA GCGTCTCTTC ACTCTAAGTG ACTCTTCTCA GATGCACATC TGCAGAAAAT GTAAGACCTA TGCGAATGTG ATCGAGAGGA CTCCAAGCAG TGGAAGAAAG ATCAGAGGGC CATATTGTAG AGTCTGCGTA TCCTCAGACC ATGTGGTTAG AGTCTATGTT CCGTATGGAG CTAAACTTCT GTGTCAGGAG CTGTTCAGCA TGGGCATCAC TCTCAACTTC GACACCAAGC TCTGCTGA |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 |
>NRPDB21203 | Arabidopsis lyrata | orf sequence | RNA Polymerase IV Small Subunit
ATGGACATTG ATGAGATGGA TATTGAAGAG ATCGAGGCTA CTGCGGAGAT CAATCTATCT GAGCTAGGAG AAAGTTTTCT CCAGAGTTTC TGCAAGAAAG CTGCAACTTC CTTCTTTGAT AAGTATGGAC TTATAAGTCA TCAGCTCAAT TCCTACAACT TCTTCATTCA ACACGGGCTT CAGGATGTGT TTGAATCCTT TGGTGATATG CTTGTGGAAC CGTCGTTTGA TGTGATAAAG AAGAAGGATA ACGATTGGAG ATACGCTACG GTGAAATTCG GAAAAGTCAC TGTGGAGAAG CCCACTTTCT TTTCCGATGA CAAGGAGCTT GAGTTTCTCC CATGGCATGC CAGGCTTCAG AACATGACAT ATTCAGCAAG GATCAAAGTC AATGTCCAAG TTGAGGTGTT CATAAAAACT GTTGTTAAAA GCGACAAATT CAAGACGGGA CAAGACGAAT ATGTCGAGAA GAAGATACTT GAGGTCAAAA AGCAGGACAT TCTAATTGGT AGCATTCCTG TCATGGTGAA ATCTGTCCTT TGCAAAACAA GCGAGAAAGG AAAAGAAAAC TGCAGAAAGG GGGATTGTGC CTTTGATCAG GGTGGCTATT TTGTGATAAA GGGGGCTGAG AAGGTGTTTA TAGCTCAAGA ACAGATGTGC ACAAAGAGAC TGTGGATTTC TAACTCACCA TGGACAGTCT CTTTCAGGTC CGAAAATAAA AGAAATAGGT TCATTGTGCG CCTCTCGGAG AATGAGAAAT CAGAAGACTA TAAGAAAAGG GAGAAAGTAC TGACAGTGTA CTTCTTGTCG ACTGAGATTC CAGTCTGGCT CCTGTTCTTT GCGCTGGGTG TTTCGTCAGA CAAAGAAGCC ATGAATCTGA TTGCTTTTGA TGGTGATGAT GCAAGCATTA CCAACAGTCT CATAGCTTCT ATCCATGAAG CTGATGCAGT TTGTGAAGCT TTTCGCTGTG GGAACAATGC TTTAAGTTAT GTTGAACAGC AGATCAAACC TTGGAGGGCC GGCTTTTCAA GATGGGGAAA CGAAAGGGTC TACAATGGTA GATCGGGTGA GATGATGCGT TCTCTGATAT TCATGGGCCC AACTTTCTAC CAGCGACTTG TCCACATGTC AGAGGACAAA GTCAAGTTCA GGAACACCGG ACCAGTCCAC CCGCTCACAC GCCAGCAAGT CGCAGACAGG AAGAGGTTTG GCGGGATAAG GTTTGGAGAA ATGGAGCGAG ACTGCCTAAT AGCTCACGGT GCATCTGCTA ATCTGCACGA GCGTCTCTTC ACTCTAAGTG ACTCTTCTCA GATGCACATC TGCAGAAAAT GTAAGACCTA TGCGAATGTG ATCGAGAGGA CTCCAAGCAG TGGAAGAAAG ATCAGAGGGC CATATTGTAG AGTCTGCGTA TCCTCAGACC ATGTGGTTAG AGTCTATGTT CCGTATGGAG CTAAACTTCT GTGTCAGGAG CTGTTCAGCA TGGGCATCAC TCTCAACTTC GACACCAAGC TCTGCTGA |
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1 61 121 181 241 301 361 421 481 |
>NRPDB21203 | Arabidopsis lyrata | protein sequence | RNA Polymerase IV Small Subunit
MDIDEMDIEE IEATAEINLS ELGESFLQSF CKKAATSFFD KYGLISHQLN SYNFFIQHGL QDVFESFGDM LVEPSFDVIK KKDNDWRYAT VKFGKVTVEK PTFFSDDKEL EFLPWHARLQ NMTYSARIKV NVQVEVFIKT VVKSDKFKTG QDEYVEKKIL EVKKQDILIG SIPVMVKSVL CKTSEKGKEN CRKGDCAFDQ GGYFVIKGAE KVFIAQEQMC TKRLWISNSP WTVSFRSENK RNRFIVRLSE NEKSEDYKKR EKVLTVYFLS TEIPVWLLFF ALGVSSDKEA MNLIAFDGDD ASITNSLIAS IHEADAVCEA FRCGNNALSY VEQQIKPWRA GFSRWGNERV YNGRSGEMMR SLIFMGPTFY QRLVHMSEDK VKFRNTGPVH PLTRQQVADR KRFGGIRFGE MERDCLIAHG ASANLHERLF TLSDSSQMHI CRKCKTYANV IERTPSSGRK IRGPYCRVCV SSDHVVRVYV PYGAKLLCQE LFSMGITLNF DTKLC |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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