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CHR21237 (Arabidopsis lyrata) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 4021 4081 4141 4201 4261 4321 4381 4441 4501 4561 4621 4681 4741 4801 4861 4921 4981 5041 5101 |
>CHR21237 | Arabidopsis lyrata | genomic sequence | DRD subclass
ctggttttgt atccgggatt gacaaaatga tccaaatcat gaaaatttaa attcagttca tacccgataa aaataggggg aaggtgttaa cttttttttt ctatccaaaa attgtgaatg tttcatatca taccatatca cattaatttt gatttttttt gtttgtagtc cattcaatcc tgaaaaaatg ttattttaag ctatgaatga tttgaataaa ttataaaaaa aaacaaaagt gaccaaatag acaactttat aaaaattaga tgttcgagag agtccaccaa ttaagagggc atccccgttc gcttgagtaa gcaaaactga agtgtcagtc aagtcctcaa accaattaat aaatatttgt taatagatat atatatatat atatatatat atctatatat atattttgtt atgaatagtc tataacaatg ttaatttgta ccatttttgt attattattc taccttatat tcaaaccaaa acattaagaa ATGTTTGTTT TTGCTAAGAA GCTTAAGgta agtcaaagac aaaatgaagt tgtaagaaag atgtatatga attctttaaa acattcttag aaatttggat aaaagcagac attagaagtg agtgtgaaat aatctagtta aatgactata tatattattg atcacattac tgagaaatgt gtggccaact atattaacga attgtgaaca aaatatagca atataacact agtatgtttg acttctaaag atatttcgat gcacaaattt gtatgagatg atttgtgcta aattcttaga atctaaacta ttatttactc tcaattttgt tcattttaaa aactaaaccc tctcaatatt gagccttggg ctcctcttag cagcattgga ggttcattat gcaaatctaa aatttgaaga tgtcaaatgg aattgggagt aaattcaaag gtttttattg caaaagtatt tttttttttt tcctcataaa agtgtaattg gtcagAGTCT CCCAGCTTCG AAGCACGAGC GGAGCGAGGC AAACCAAAAA TCCAGTTCGC TTCGTTGCCA TATTCAATTC TTGTTCATCT TCCTCAAATT CAGCTCGAAA GTTCCAACCT TTAATTCTTT AATGGAGATT CTCCATCCCG ATCAAGCAAC CTCAAACGgt atacgaatct tctctgtcaa aaattaggtt ttttcgtctg attttactct cactacattc tatgcatgtc gttcccaaac ctgatttcga attcaattgg ttgaatttct tctgttgttc atttagagag taatgtgact atgtggcttt gttcagGGTT CTACAAGAAT GTGCATAAAA GAAAGCAAAA TCAAGTTGAT GATGGACTTT GTTCCGATTC TGAAGCAAAG CGGTTAAAGA GTTCATCCAA AGTGATTGAT TACTCTAACC CATTTGCAAT TAGTAACATG CTTGAAGCAT TAGATGGTGG TAAATTTGGG AGTGTTACTA AAGAGTTGCA AGAGATAGCT GATATGAGGA TGGATTTGAT TAAGCGTTGT ATTTGGTTAT ATCCATCGTT AGCGTATACC GAGTTTGAAG ATGAGAAGAC GATGTTGAGT TTGGATAATC AACAGGTTGT GGAAGGTGGT GTTATTAATT TGGATGATGA TGATGATGAT GATGATGATG TTTCGAATAA AGCTATTTGT GTTGTTCCTT CGTCTGAGAT TGTGGTTCTT GATTCTGATG ATGAAGACAA TGAGAGGCAG AGGTCTACGT ATCAGTTTCA GTCTACTCTT GTACAGCTTC AGAAGAATCA AGGAGATGTG ACTCCAGTAA CACCGCAATT CACTTTTGAG GAGGTCGATT TAGGGAGGAG TAAGGAGATG ATGCCTTCTG TAATTAAGGC CATTGTGgta agttatgttt ttctcttaag ctatcgagta ctgcgtttga acttaattaa aggttacaaa ttaatgtcat ctgtgtttac aaactagcaa tacaagaggt ttaagttttg tttatatgta attttcatag GAGGGACAAA CAAGTAGAGA CAAAGTCATT GCCATAGAAA ATGGTGTGGC TAACGAAAAG GGTGTCTACG TGGGGGTTGA GGATGATGAC ATTGATAATG AGTCTGAAGC AGCAGATGAA GATCTCGGTA ATATCTGGAA TGAAATGGCC ATGTCTATAG AGTGTTCCAa ggtatatatg tctgaacagt tacttcagat ggaactgaag tttcagtcga tacgacaaaa caatcttgtg ttatgttacc tcttgccgtc atatacattt gtgaagaaac tcatcacaag tattttaatt atttgtgttt cttccctttc tttttggttg atagagtttc tgtttgacaa atcggttgga atggactcta cgtatgcatt gctcagtcaa gcttccttgt tccttagtgt agtaatgttg catctcttag gtttcttgca tttgagatag ttagtagaaa gctcatttta aaagcttcgc tccttaaatt tgatcttttt cgccactttt cctgctttgt tcatttctga ttacaataaa atgtacAGGA TATAGCATGG GAGACTTCGC ATAAGCAAAA GGCAGATGTA GTGGAAGACT GTGAGCACTC ATTTATTCTA AAGGATGATA TGGGTTATGT TTGCCGTGTC TGCGGAGTTA TTGAGAAAAG TATACTAGAG ATAATTGATG TGCAATTCAC TAAAgtaagt atcctttttt tctgatacta agctaatttg tcctttcaag gaaaagtatg tttcttggta ttcgacaaat tttgttgtct gaatacaata gggtaggact tctccataca tgtggtctat tttcattagc tccattatgc ctaaagtttt tttgttatat aactgttacg gaaattttta tatccatatg atcttgaaat tgtttcccaa gtcagattct ggtggagctt ctaatttttc ttgtaatttt cattgtagGC AAAACGAAAC ACAAGAACAT ATGCCTCTGA AACTAGAAAT AAAAGGTTTG GCGAATCTGA TGCTGAACTT AAGTTTTCTG AAGAAGGGCT TATGATAGGT GGACTTGCTG CTCATCCAAC GCATGCTGAC AAAATGAAGC CTCATCAAAT TGAGGGATTC CAGTTCCTTT GCAGCAATTT AGTGGCAGAC GATCCTGGTG GTTGTATCAT GGCTCATGCT CCAGGTTCTG GAAAAACCTT CATGATCATC AGTTTTATGC AGAGCTTCCT TGCTAAGTAT CCTCAGGCTA AGCCACTGGT TGTGCTTCCA AAGGGAATTT TGTCTACATG GAAAAAAGAG TTCCTTAGAT GGCAAGTTGA GGACATACCA CTGCTTGATT TCTACAGTGC TAGAGCAGAA AACCGAGCAC AGCAGCTGGC TATCTTGAGA AAATGGATGG AGAAGAAGAG TATCTTATTT CTTGGGTACA AGCAGTTCTC AACTATTGTG TGTGATGATA CAAGTACCGA CTCACTTTCT TGCCAGGAGA TACTGCTCAA AGTACCTTCG ATCCTCATTT TGGATGAAGG ACACACTCCA AGGAATGAGG ACACAAATGT ATTGCAGTCC CTTGCCCAAG TCCAAACACC AAGAAAAGTT GTCCTCTCAG GAACGCTTTA TCAGAACCAT GTAAAGGAGG TTTTCAACAT TTTGAACCTC GTTCGACCCA AATTCCTCAA ACTGGATACC TCCAAGTCTA TCGTGAAGAG GATATTGAGT TATGCTCCTA TATCTGATGT AAGGTCACAT ATGGGAAACA ATTCAGATGT GTCTTCGGCC TTCAATGAAA TTGTGGAGTA CACACTGCAG AAGAGCGAGG ATTTCACGAT GAAAATTAAT GTAATCCAAG ATTTGCGGGA GATGACAAAG AAAGTGCTTC ATTACTACAA AGGAGATTTC CTAGATGAGC TTCCTGGACT TGCTGATTTC ACTGTGGTTC TTAACCTGTC TCCAAGGCAG TTGAACGAAG TGAAGAAGTT AAGACGTGAG AAGAGAAAAT TTAAGGTTTC GGCTGTGGGA AGTGCAATTT ACCTTCACCG CGAAGCTGAA Agttttctct gagaaggctg annnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nttcttaagg cgatacagtc ctgagcagcg tgagtggtaa tggaaaggtt taacaattcg ccagatgcca aaatcttctt tggttcgata aaagcatgtg gagaaggaat ctcacttgtt ggagcatctc gcatactgat attggatgtc ctctaaaccc ttctgtgaca cgccaagCCA TCGGGCGGGC TTTTCGACCC GGACAAACAA AGAAGGTGCA TGCATACAGA TTGATTGCTG GGTCATCACC TGAGGAGGAG GATCACAACA CTTGCTTCAA AAAGGAAGTC ATCTCAAAGA TGTGGTTCGA GTGGAACGAG TACTGCGGAT ACCGAAACTT TGAGGTAGAG ACAATTGATG TGGATGATGC TGATGATATG TTCCTTGAAA GTCCTACCTT AAGAGAAGAC ATAAGAGTTC TCTACAAAAG GTAAagtcag ttttgaccag atccacacat aactctttac gtcacatttt ctctgttggt gaacttccgc aatgctcatt tttcaggtaa acgcagaaat aatgcagaca gaattcttca ggttttggac atgcttaggt tttaggagtc tgtcaataag ataacttcgg gaagatcctt tttgaatttt ctgaaagaat tttagcattt taagtgtagt ttcaatgtca aacctttggt ctcatgtgcc tctgaccata taattagtct atcacattaa agtaggaaga acaaatcgta tctaatctta gattgtgttc accttctcat gtcttctcat taatctacaa tttcgtcttt ttgggtttac tttcacaaaa gaatacattt cgacaccttt ctattctcct catcaagcta caaagtcatg caacaattgt gaagagccaa gccggtgctg gtggttgcga gagtttaagt attggagatc ggttcccggg ata |
Transcript Splice Model
501-527 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 |
>CHR21237 | Arabidopsis lyrata | transcript sequence | DRD subclass
ATGTTTGTTT TTGCTAAGAA GCTTAAGAGT CTCCCAGCTT CGAAGCACGA GCGGAGCGAG GCAAACCAAA AATCCAGTTC GCTTCGTTGC CATATTCAAT TCTTGTTCAT CTTCCTCAAA TTCAGCTCGA AAGTTCCAAC CTTTAATTCT TTAATGGAGA TTCTCCATCC CGATCAAGCA ACCTCAAACG GGTTCTACAA GAATGTGCAT AAAAGAAAGC AAAATCAAGT TGATGATGGA CTTTGTTCCG ATTCTGAAGC AAAGCGGTTA AAGAGTTCAT CCAAAGTGAT TGATTACTCT AACCCATTTG CAATTAGTAA CATGCTTGAA GCATTAGATG GTGGTAAATT TGGGAGTGTT ACTAAAGAGT TGCAAGAGAT AGCTGATATG AGGATGGATT TGATTAAGCG TTGTATTTGG TTATATCCAT CGTTAGCGTA TACCGAGTTT GAAGATGAGA AGACGATGTT GAGTTTGGAT AATCAACAGG TTGTGGAAGG TGGTGTTATT AATTTGGATG ATGATGATGA TGATGATGAT GATGTTTCGA ATAAAGCTAT TTGTGTTGTT CCTTCGTCTG AGATTGTGGT TCTTGATTCT GATGATGAAG ACAATGAGAG GCAGAGGTCT ACGTATCAGT TTCAGTCTAC TCTTGTACAG CTTCAGAAGA ATCAAGGAGA TGTGACTCCA GTAACACCGC AATTCACTTT TGAGGAGGTC GATTTAGGGA GGAGTAAGGA GATGATGCCT TCTGTAATTA AGGCCATTGT GGAGGGACAA ACAAGTAGAG ACAAAGTCAT TGCCATAGAA AATGGTGTGG CTAACGAAAA GGGTGTCTAC GTGGGGGTTG AGGATGATGA CATTGATAAT GAGTCTGAAG CAGCAGATGA AGATCTCGGT AATATCTGGA ATGAAATGGC CATGTCTATA GAGTGTTCCA AGGATATAGC ATGGGAGACT TCGCATAAGC AAAAGGCAGA TGTAGTGGAA GACTGTGAGC ACTCATTTAT TCTAAAGGAT GATATGGGTT ATGTTTGCCG TGTCTGCGGA GTTATTGAGA AAAGTATACT AGAGATAATT GATGTGCAAT TCACTAAAGC AAAACGAAAC ACAAGAACAT ATGCCTCTGA AACTAGAAAT AAAAGGTTTG GCGAATCTGA TGCTGAACTT AAGTTTTCTG AAGAAGGGCT TATGATAGGT GGACTTGCTG CTCATCCAAC GCATGCTGAC AAAATGAAGC CTCATCAAAT TGAGGGATTC CAGTTCCTTT GCAGCAATTT AGTGGCAGAC GATCCTGGTG GTTGTATCAT GGCTCATGCT CCAGGTTCTG GAAAAACCTT CATGATCATC AGTTTTATGC AGAGCTTCCT TGCTAAGTAT CCTCAGGCTA AGCCACTGGT TGTGCTTCCA AAGGGAATTT TGTCTACATG GAAAAAAGAG TTCCTTAGAT GGCAAGTTGA GGACATACCA CTGCTTGATT TCTACAGTGC TAGAGCAGAA AACCGAGCAC AGCAGCTGGC TATCTTGAGA AAATGGATGG AGAAGAAGAG TATCTTATTT CTTGGGTACA AGCAGTTCTC AACTATTGTG TGTGATGATA CAAGTACCGA CTCACTTTCT TGCCAGGAGA TACTGCTCAA AGTACCTTCG ATCCTCATTT TGGATGAAGG ACACACTCCA AGGAATGAGG ACACAAATGT ATTGCAGTCC CTTGCCCAAG TCCAAACACC AAGAAAAGTT GTCCTCTCAG GAACGCTTTA TCAGAACCAT GTAAAGGAGG TTTTCAACAT TTTGAACCTC GTTCGACCCA AATTCCTCAA ACTGGATACC TCCAAGTCTA TCGTGAAGAG GATATTGAGT TATGCTCCTA TATCTGATGT AAGGTCACAT ATGGGAAACA ATTCAGATGT GTCTTCGGCC TTCAATGAAA TTGTGGAGTA CACACTGCAG AAGAGCGAGG ATTTCACGAT GAAAATTAAT GTAATCCAAG ATTTGCGGGA GATGACAAAG AAAGTGCTTC ATTACTACAA AGGAGATTTC CTAGATGAGC TTCCTGGACT TGCTGATTTC ACTGTGGTTC TTAACCTGTC TCCAAGGCAG TTGAACGAAG TGAAGAAGTT AAGACGTGAG AAGAGAAAAT TTAAGGTTTC GGCTGTGGGA AGTGCAATTT ACCTTCACCG CGAAGCTGAA ACCATCGGGC GGGCTTTTCG ACCCGGACAA ACAAAGAAGG TGCATGCATA CAGATTGATT GCTGGGTCAT CACCTGAGGA GGAGGATCAC AACACTTGCT TCAAAAAGGA AGTCATCTCA AAGATGTGGT TCGAGTGGAA CGAGTACTGC GGATACCGAA ACTTTGAGGT AGAGACAATT GATGTGGATG ATGCTGATGA TATGTTCCTT GAAAGTCCTA CCTTAAGAGA AGACATAAGA GTTCTCTACA AAAGGTAA |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 |
>CHR21237 | Arabidopsis lyrata | orf sequence | DRD subclass
ATGTTTGTTT TTGCTAAGAA GCTTAAGAGT CTCCCAGCTT CGAAGCACGA GCGGAGCGAG GCAAACCAAA AATCCAGTTC GCTTCGTTGC CATATTCAAT TCTTGTTCAT CTTCCTCAAA TTCAGCTCGA AAGTTCCAAC CTTTAATTCT TTAATGGAGA TTCTCCATCC CGATCAAGCA ACCTCAAACG GGTTCTACAA GAATGTGCAT AAAAGAAAGC AAAATCAAGT TGATGATGGA CTTTGTTCCG ATTCTGAAGC AAAGCGGTTA AAGAGTTCAT CCAAAGTGAT TGATTACTCT AACCCATTTG CAATTAGTAA CATGCTTGAA GCATTAGATG GTGGTAAATT TGGGAGTGTT ACTAAAGAGT TGCAAGAGAT AGCTGATATG AGGATGGATT TGATTAAGCG TTGTATTTGG TTATATCCAT CGTTAGCGTA TACCGAGTTT GAAGATGAGA AGACGATGTT GAGTTTGGAT AATCAACAGG TTGTGGAAGG TGGTGTTATT AATTTGGATG ATGATGATGA TGATGATGAT GATGTTTCGA ATAAAGCTAT TTGTGTTGTT CCTTCGTCTG AGATTGTGGT TCTTGATTCT GATGATGAAG ACAATGAGAG GCAGAGGTCT ACGTATCAGT TTCAGTCTAC TCTTGTACAG CTTCAGAAGA ATCAAGGAGA TGTGACTCCA GTAACACCGC AATTCACTTT TGAGGAGGTC GATTTAGGGA GGAGTAAGGA GATGATGCCT TCTGTAATTA AGGCCATTGT GGAGGGACAA ACAAGTAGAG ACAAAGTCAT TGCCATAGAA AATGGTGTGG CTAACGAAAA GGGTGTCTAC GTGGGGGTTG AGGATGATGA CATTGATAAT GAGTCTGAAG CAGCAGATGA AGATCTCGGT AATATCTGGA ATGAAATGGC CATGTCTATA GAGTGTTCCA AGGATATAGC ATGGGAGACT TCGCATAAGC AAAAGGCAGA TGTAGTGGAA GACTGTGAGC ACTCATTTAT TCTAAAGGAT GATATGGGTT ATGTTTGCCG TGTCTGCGGA GTTATTGAGA AAAGTATACT AGAGATAATT GATGTGCAAT TCACTAAAGC AAAACGAAAC ACAAGAACAT ATGCCTCTGA AACTAGAAAT AAAAGGTTTG GCGAATCTGA TGCTGAACTT AAGTTTTCTG AAGAAGGGCT TATGATAGGT GGACTTGCTG CTCATCCAAC GCATGCTGAC AAAATGAAGC CTCATCAAAT TGAGGGATTC CAGTTCCTTT GCAGCAATTT AGTGGCAGAC GATCCTGGTG GTTGTATCAT GGCTCATGCT CCAGGTTCTG GAAAAACCTT CATGATCATC AGTTTTATGC AGAGCTTCCT TGCTAAGTAT CCTCAGGCTA AGCCACTGGT TGTGCTTCCA AAGGGAATTT TGTCTACATG GAAAAAAGAG TTCCTTAGAT GGCAAGTTGA GGACATACCA CTGCTTGATT TCTACAGTGC TAGAGCAGAA AACCGAGCAC AGCAGCTGGC TATCTTGAGA AAATGGATGG AGAAGAAGAG TATCTTATTT CTTGGGTACA AGCAGTTCTC AACTATTGTG TGTGATGATA CAAGTACCGA CTCACTTTCT TGCCAGGAGA TACTGCTCAA AGTACCTTCG ATCCTCATTT TGGATGAAGG ACACACTCCA AGGAATGAGG ACACAAATGT ATTGCAGTCC CTTGCCCAAG TCCAAACACC AAGAAAAGTT GTCCTCTCAG GAACGCTTTA TCAGAACCAT GTAAAGGAGG TTTTCAACAT TTTGAACCTC GTTCGACCCA AATTCCTCAA ACTGGATACC TCCAAGTCTA TCGTGAAGAG GATATTGAGT TATGCTCCTA TATCTGATGT AAGGTCACAT ATGGGAAACA ATTCAGATGT GTCTTCGGCC TTCAATGAAA TTGTGGAGTA CACACTGCAG AAGAGCGAGG ATTTCACGAT GAAAATTAAT GTAATCCAAG ATTTGCGGGA GATGACAAAG AAAGTGCTTC ATTACTACAA AGGAGATTTC CTAGATGAGC TTCCTGGACT TGCTGATTTC ACTGTGGTTC TTAACCTGTC TCCAAGGCAG TTGAACGAAG TGAAGAAGTT AAGACGTGAG AAGAGAAAAT TTAAGGTTTC GGCTGTGGGA AGTGCAATTT ACCTTCACCG CGAAGCTGAA ACCATCGGGC GGGCTTTTCG ACCCGGACAA ACAAAGAAGG TGCATGCATA CAGATTGATT GCTGGGTCAT CACCTGAGGA GGAGGATCAC AACACTTGCT TCAAAAAGGA AGTCATCTCA AAGATGTGGT TCGAGTGGAA CGAGTACTGC GGATACCGAA ACTTTGAGGT AGAGACAATT GATGTGGATG ATGCTGATGA TATGTTCCTT GAAAGTCCTA CCTTAAGAGA AGACATAAGA GTTCTCTACA AAAGGTAA |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 |
>CHR21237 | Arabidopsis lyrata | protein sequence | DRD subclass
MFVFAKKLKS LPASKHERSE ANQKSSSLRC HIQFLFIFLK FSSKVPTFNS LMEILHPDQA TSNGFYKNVH KRKQNQVDDG LCSDSEAKRL KSSSKVIDYS NPFAISNMLE ALDGGKFGSV TKELQEIADM RMDLIKRCIW LYPSLAYTEF EDEKTMLSLD NQQVVEGGVI NLDDDDDDDD DVSNKAICVV PSSEIVVLDS DDEDNERQRS TYQFQSTLVQ LQKNQGDVTP VTPQFTFEEV DLGRSKEMMP SVIKAIVEGQ TSRDKVIAIE NGVANEKGVY VGVEDDDIDN ESEAADEDLG NIWNEMAMSI ECSKDIAWET SHKQKADVVE DCEHSFILKD DMGYVCRVCG VIEKSILEII DVQFTKAKRN TRTYASETRN KRFGESDAEL KFSEEGLMIG GLAAHPTHAD KMKPHQIEGF QFLCSNLVAD DPGGCIMAHA PGSGKTFMII SFMQSFLAKY PQAKPLVVLP KGILSTWKKE FLRWQVEDIP LLDFYSARAE NRAQQLAILR KWMEKKSILF LGYKQFSTIV CDDTSTDSLS CQEILLKVPS ILILDEGHTP RNEDTNVLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSIVKRILS YAPISDVRSH MGNNSDVSSA FNEIVEYTLQ KSEDFTMKIN VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPRQ LNEVKKLRRE KRKFKVSAVG SAIYLHREAE TIGRAFRPGQ TKKVHAYRLI AGSSPEEEDH NTCFKKEVIS KMWFEWNEYC GYRNFEVETI DVDDADDMFL ESPTLREDIR VLYKR |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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