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NFC5 (Arabidopsis thaliana) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 2881 2941 3001 3061 3121 3181 3241 3301 3361 3421 3481 3541 3601 3661 3721 3781 3841 3901 3961 4021 |
>NFC5 | Arabidopsis thaliana | genomic sequence | NFC4_5 group
atcttcttct tttgaacgct aaaccgagtt ttggtttcaa ttttcaccgc ctttagaaca gcgtttgcgt tgttaagttg atcagttagt aactttctac caagatttag aagaaagctt tactcaaatt ttgtaatggg aagatactga ttatactctt tagtgtgaag aaatcatttt aattcgctaa tttaagtatt tgcctattgg gtatttgccg ggacgaagtt tactccacgt ggcataaata ataatattat aaaaaaaaca aaggagagta gagagaaaac GAGAGAAAAG AAGGAAATGG AAAGCGAAGC AGCAGCGACT GTTCAAGCCA CCAGGCCGAG AAGAGCACCT AGGACTCCGG TGACAGCCAT TTTGACGGAT AAGAGAAGAC GGAAACCTAA GAGCAACAAC GAGTCTCAGT TACCATTTTT GCTACAGCAG AGTCAAAAGG CCACCGTTGA CGACACTTAC TCTCAGTGGA AGACTCTTCT TCCCATTCTC TATGATTCGT TTGTTAATCA TACCCTCGTC TGGCCCTCTC TCTCTTGCAG gtctgtgttt ttttttatag gttttctgtt tctagggttt tcgatctttg gttttggaga aagttggttc ttttttggga aataaaaatt ctagctttgt gcttttggtc aggcgattga gttacatttc cgtttcagct agtgaaatac tcatagattg agagtttttc ttagctggtt tctggaattt gtgagattag gacatgttct agttcgggtt tttaatttag ctcagtctcc atgcttttct gtgtttcttt ctcttttagg cttttagctc attagctatc tgatgtttcc atttttgaac ctctggaact tgttttggta ggaaaatgat gtcgttgata acacttgacc aactcggttt aggtgttctg ttttgttact ttttggtttc agatgtttag ctgtgctacg atttagtgaa gtgtttagct tttgtgtaaa gaggtacgat ttcgttgtaa tcctgttgtt tgatttgagc agATGGGGGC CACAGCTTGA GCAAGCAGGT TCTAAGACTC AACGTCTCTA TCTCTCGGAA CAAgtgagtt tgctcttgtt cttgtggttt gtacattttt tcttgatgaa aaatatccaa agtttgttta ctgctcctta tgtttaccgt tttttcttgg ttctgtcatt agACGAATGG CAGTGTGCCT AATACTTTGG TCATAGCCAA TTGCGAAACT GTTAATAGGC AGgtaattag tttttctcta ccaaagcttg tgcttttgtc cttgtgttac tctctgctga gatgaaatta ttgaaatacc gtttctttat atgctttcag CTTAATGAAA AGGCACACTC TCCATTTGTG AAGAAGTACA AGACCATCAT CCACCCTGGA GAGgtgtgat attcctgtat tctcattgtt ttttcttaga tggatttact gaatctgcat ttcgtttagg acttgagtgc tgaaaaagat tttgttttgt gtacccttca ttcatcgcag GTCAACAGAA TTAGGGAACT CCCTCAAAAT AGCAAGATTG TAGCTACTCA CACCGACAGT CCTGATgtaa gttctgcttt ctcgggtcat cagcgtgaca aaaaaaaggc tttcgttatt cagtatcctt gtttttgaat agttccagtt tcagtcatgc aagtatgata tattggtttt cagATTCTCA TTTGGAACAC TGAGACTCAA CCAGACCGGT ATGCTGTGCT TGGAGCTCCA GATTCTCGTC CAGATTTGgt atgctcttgt gagaattttc gttatgttgt ctcactgagt taaacaacct gcttgtgcat catattaaca atcgaaagag ctactctttt tgcatcattt gaacaacttt tattttcagT TACTAATTGG GCACCAGGAT GATGCTGAAT TTGCTCTTGC AATGTGCCCA ACCGAACCTT TTGTTCTCTC TGGAGgtttg tatcagttct atttttgtgt catatcttgt ggtttgcaag tttctcatca aagattcttc cgtgcagGCA AGGACAAGTC CGTTATTTTG TGGAATATCC AAGACCATAT CACAATGGCT GGTTCGGATT CCAAATCCCC TGGATCCAGC TTCAAGCAGA CTGGTGAAGG TAGTGATAAA ACTGGTGGTC CTTCTGTTGG CCCTCGAGGC ATATATAATG GCCACAAAGA TACTGTTGAA GACGTGGCAT TCTGTCCATC TAGgtaactt cttgggacag tctccttttt taataagctc ttaagtttac acccaaatgc agacctactc agaattttct gatgcttttg gtataaaaaa attggtaatt ttttgttttg tcctacagTG CACAAGAATT CTGCAGTGTT GGTGACGATT CTTGCCTTAT GCTATGGGAC GCAAGAACTG GCACTAGTCC TGCCATGAAG gtacctcttt tttttagcca gatcgacatt tgaggtttaa ctttttggtc ttgtttcaga ttccgtctgt ttcttcttgt gcgctggcag GTTGAGAAGG CACATGATGC TGATCTTCAC TGTGTCGATT GGAATCCTCA TGACAATAAT CTGATCCTGA CTGGgtactg atttcacaaa cttaaatact tgtccaaaag tacagagatg ctactcgtcc tctcactcta cgcttctaca tcacttttcc agGTCAGCAG ATAACACTGT CCGTGTGTTT GACCGCCGAA ACCTTACCTC AAATGGAGTT GGTTCACCTG TTTACAAATT TGAAGGCCAC AGAGCTGCTG TTCTTTGTGT TCAGgtttca acaacatgcc accacctctg tttttttttt ttgttttttt cttttcatat tatttgtcct gtaaacctat ccccaatgac attgcttcgt tatcaattca gTGGTCTCCT GATAAATCAT CTGTTTTTGG GAGTTCTGCA GAAGATGGTC TCTTGAACAT ATGGGATTGT GATAGGgtta gtacaatttc tcacattcac atttaaaact attctcttac tttcaagctc accatattaa catatatgtg tgcaccagGT TGGCAAGAAG TCTGAGCGTG CAACCAAAAC TCCTGATGGG CTTTTCTTCC AGCATGCTGG TCACAGgttc tcaagactta attctaattc acttgcttgc ctttcccttt tactctcttc agtggaatct ataatttcct cgtgtatatc ttcttagGGA CAAAGTGGTC GACTTCCACT GGAGCCTATT GAACCCTTGG ACTATTGTCA GTGTTTCTGA TAATTGTGAG AGTATCGGTG GAGGTGGTAC ATTGCAGgta cttttaaatg tcttgctaca tttactctgg aacctaccta tgattaactt tctcggtaaa aatgaaaact tttgatttgt aaattaatgc agATATGGCG GATGAGTGAC TTGATTTACA GACCGGAAGA TGAAGTCCTG ACAGAGCTAG AGAAATTCAA GTCACATGTT TTCACATGTA CCTCCAAGTC TTGAGGAAGC AATCCCATCA TGTCTATTAG TATTAGTAAG TTGCTGGGGT TTAGTGTCAG TTTTTGCGAG GAAAATCAGT TTACTTATGC GATTTAGGTG TTATTTTTGC GGAATATTAC TTGGTTTATG TAGGCCAGTA ATTCAACATA TTGGTAGATT TAGGACTTCC GGAATCTTGT ATGGTACTTG ATCCTGTTTC TTCAGGTTAA TCCTAGGCAC CTAACTTGCT TGTattttca actttttttt ttgtgaatcc aaacttggtt aagcaagacc aaactaaaac aacagattga atcagtgaaa tccaaatctc aagtgcttga catttgactc atgtgtccct gaaccgttca gttctacttc caacaacaaa agcagataga aaatcgtcgc tcttcacctc tattcggttt catttcaagc aagattggtt ctgcgtaaac cgggttgaac cggatcaact cattagatct acaaaggatt tgtgcaatct taag |
Transcript Splice Model
291-560 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 |
>NFC5 | Arabidopsis thaliana | transcript sequence | NFC4_5 group
GAGAGAAAAG AAGGAAATGG AAAGCGAAGC AGCAGCGACT GTTCAAGCCA CCAGGCCGAG AAGAGCACCT AGGACTCCGG TGACAGCCAT TTTGACGGAT AAGAGAAGAC GGAAACCTAA GAGCAACAAC GAGTCTCAGT TACCATTTTT GCTACAGCAG AGTCAAAAGG CCACCGTTGA CGACACTTAC TCTCAGTGGA AGACTCTTCT TCCCATTCTC TATGATTCGT TTGTTAATCA TACCCTCGTC TGGCCCTCTC TCTCTTGCAG ATGGGGGCCA CAGCTTGAGC AAGCAGGTTC TAAGACTCAA CGTCTCTATC TCTCGGAACA AACGAATGGC AGTGTGCCTA ATACTTTGGT CATAGCCAAT TGCGAAACTG TTAATAGGCA GCTTAATGAA AAGGCACACT CTCCATTTGT GAAGAAGTAC AAGACCATCA TCCACCCTGG AGAGGTCAAC AGAATTAGGG AACTCCCTCA AAATAGCAAG ATTGTAGCTA CTCACACCGA CAGTCCTGAT ATTCTCATTT GGAACACTGA GACTCAACCA GACCGGTATG CTGTGCTTGG AGCTCCAGAT TCTCGTCCAG ATTTGTTACT AATTGGGCAC CAGGATGATG CTGAATTTGC TCTTGCAATG TGCCCAACCG AACCTTTTGT TCTCTCTGGA GGCAAGGACA AGTCCGTTAT TTTGTGGAAT ATCCAAGACC ATATCACAAT GGCTGGTTCG GATTCCAAAT CCCCTGGATC CAGCTTCAAG CAGACTGGTG AAGGTAGTGA TAAAACTGGT GGTCCTTCTG TTGGCCCTCG AGGCATATAT AATGGCCACA AAGATACTGT TGAAGACGTG GCATTCTGTC CATCTAGTGC ACAAGAATTC TGCAGTGTTG GTGACGATTC TTGCCTTATG CTATGGGACG CAAGAACTGG CACTAGTCCT GCCATGAAGG TTGAGAAGGC ACATGATGCT GATCTTCACT GTGTCGATTG GAATCCTCAT GACAATAATC TGATCCTGAC TGGGTCAGCA GATAACACTG TCCGTGTGTT TGACCGCCGA AACCTTACCT CAAATGGAGT TGGTTCACCT GTTTACAAAT TTGAAGGCCA CAGAGCTGCT GTTCTTTGTG TTCAGTGGTC TCCTGATAAA TCATCTGTTT TTGGGAGTTC TGCAGAAGAT GGTCTCTTGA ACATATGGGA TTGTGATAGG GTTGGCAAGA AGTCTGAGCG TGCAACCAAA ACTCCTGATG GGCTTTTCTT CCAGCATGCT GGTCACAGGG ACAAAGTGGT CGACTTCCAC TGGAGCCTAT TGAACCCTTG GACTATTGTC AGTGTTTCTG ATAATTGTGA GAGTATCGGT GGAGGTGGTA CATTGCAGAT ATGGCGGATG AGTGACTTGA TTTACAGACC GGAAGATGAA GTCCTGACAG AGCTAGAGAA ATTCAAGTCA CATGTTTTCA CATGTACCTC CAAGTCTTGA GGAAGCAATC CCATCATGTC TATTAGTATT AGTAAGTTGC TGGGGTTTAG TGTCAGTTTT TGCGAGGAAA ATCAGTTTAC TTATGCGATT TAGGTGTTAT TTTTGCGGAA TATTACTTGG TTTATGTAGG CCAGTAATTC AACATATTGG TAGATTTAGG ACTTCCGGAA TCTTGTATGG TACTTGATCC TGTTTCTTCA GGTTAATCCT AGGCACCTAA CTTGCTTGT |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 |
>NFC5 | Arabidopsis thaliana | orf sequence | NFC4_5 group
ATGGAAAGCG AAGCAGCAGC GACTGTTCAA GCCACCAGGC CGAGAAGAGC ACCTAGGACT CCGGTGACAG CCATTTTGAC GGATAAGAGA AGACGGAAAC CTAAGAGCAA CAACGAGTCT CAGTTACCAT TTTTGCTACA GCAGAGTCAA AAGGCCACCG TTGACGACAC TTACTCTCAG TGGAAGACTC TTCTTCCCAT TCTCTATGAT TCGTTTGTTA ATCATACCCT CGTCTGGCCC TCTCTCTCTT GCAGATGGGG GCCACAGCTT GAGCAAGCAG GTTCTAAGAC TCAACGTCTC TATCTCTCGG AACAAACGAA TGGCAGTGTG CCTAATACTT TGGTCATAGC CAATTGCGAA ACTGTTAATA GGCAGCTTAA TGAAAAGGCA CACTCTCCAT TTGTGAAGAA GTACAAGACC ATCATCCACC CTGGAGAGGT CAACAGAATT AGGGAACTCC CTCAAAATAG CAAGATTGTA GCTACTCACA CCGACAGTCC TGATATTCTC ATTTGGAACA CTGAGACTCA ACCAGACCGG TATGCTGTGC TTGGAGCTCC AGATTCTCGT CCAGATTTGT TACTAATTGG GCACCAGGAT GATGCTGAAT TTGCTCTTGC AATGTGCCCA ACCGAACCTT TTGTTCTCTC TGGAGGCAAG GACAAGTCCG TTATTTTGTG GAATATCCAA GACCATATCA CAATGGCTGG TTCGGATTCC AAATCCCCTG GATCCAGCTT CAAGCAGACT GGTGAAGGTA GTGATAAAAC TGGTGGTCCT TCTGTTGGCC CTCGAGGCAT ATATAATGGC CACAAAGATA CTGTTGAAGA CGTGGCATTC TGTCCATCTA GTGCACAAGA ATTCTGCAGT GTTGGTGACG ATTCTTGCCT TATGCTATGG GACGCAAGAA CTGGCACTAG TCCTGCCATG AAGGTTGAGA AGGCACATGA TGCTGATCTT CACTGTGTCG ATTGGAATCC TCATGACAAT AATCTGATCC TGACTGGGTC AGCAGATAAC ACTGTCCGTG TGTTTGACCG CCGAAACCTT ACCTCAAATG GAGTTGGTTC ACCTGTTTAC AAATTTGAAG GCCACAGAGC TGCTGTTCTT TGTGTTCAGT GGTCTCCTGA TAAATCATCT GTTTTTGGGA GTTCTGCAGA AGATGGTCTC TTGAACATAT GGGATTGTGA TAGGGTTGGC AAGAAGTCTG AGCGTGCAAC CAAAACTCCT GATGGGCTTT TCTTCCAGCA TGCTGGTCAC AGGGACAAAG TGGTCGACTT CCACTGGAGC CTATTGAACC CTTGGACTAT TGTCAGTGTT TCTGATAATT GTGAGAGTAT CGGTGGAGGT GGTACATTGC AGATATGGCG GATGAGTGAC TTGATTTACA GACCGGAAGA TGAAGTCCTG ACAGAGCTAG AGAAATTCAA GTCACATGTT TTCACATGTA CCTCCAAGTC TTGA |
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1 61 121 181 241 301 361 421 481 |
>NFC5 | Arabidopsis thaliana | protein sequence | NFC4_5 group
MESEAAATVQ ATRPRRAPRT PVTAILTDKR RRKPKSNNES QLPFLLQQSQ KATVDDTYSQ WKTLLPILYD SFVNHTLVWP SLSCRWGPQL EQAGSKTQRL YLSEQTNGSV PNTLVIANCE TVNRQLNEKA HSPFVKKYKT IIHPGEVNRI RELPQNSKIV ATHTDSPDIL IWNTETQPDR YAVLGAPDSR PDLLLIGHQD DAEFALAMCP TEPFVLSGGK DKSVILWNIQ DHITMAGSDS KSPGSSFKQT GEGSDKTGGP SVGPRGIYNG HKDTVEDVAF CPSSAQEFCS VGDDSCLMLW DARTGTSPAM KVEKAHDADL HCVDWNPHDN NLILTGSADN TVRVFDRRNL TSNGVGSPVY KFEGHRAAVL CVQWSPDKSS VFGSSAEDGL LNIWDCDRVG KKSERATKTP DGLFFQHAGH RDKVVDFHWS LLNPWTIVSV SDNCESIGGG GTLQIWRMSD LIYRPEDEVL TELEKFKSHV FTCTSKS |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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