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ASHH4/SDG24 (Arabidopsis thaliana) |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 1081 1141 1201 1261 1321 1381 1441 1501 1561 1621 1681 1741 1801 1861 1921 1981 2041 2101 2161 2221 2281 2341 2401 2461 2521 2581 2641 2701 2761 2821 |
>SDG24 | Arabidopsis thaliana | genomic sequence | ASH1 Group
aaagcaaatc gaatatattg ttcaaaaaaa ttccttgtgc gttgaatatc ttgatataca gaatatcaat tttacggtaa aaaggagtaa ttatttagtt accaattgtg aatgatataa ctgtctggaa taaatgcaaa tgactagtaa taaattaatt attttgttac caaaaacaaa atgggtttga ttgtattggg ccagtccaaa aatctgaagc ccatttatgt ctttaaacgg atgaatggaa ataaatcgat attactcttt taccctttta agccgattta ttgccttttg cgcagaagga tttcaaaatc ctcaaaagga aaaacagcaa ctgccgctct ttctccgtta cgtcttttca ctctctgcaa atcggatccg ccactacaaa ttcatcatca tcctcgtctt cttcttctct tcaaatatta ggctttgaaa agtttcaaca tcaaatttag atctttccca attaatccgg tctattgccA TGTCTTCCTC GAAGAAGgtt acgttcgatt cacaatcttc atttcttctc tttatgaaat tatttctcgt atgatcttag tttttctctg atttcagGGT TCCGATCGGA ATCAAATCAG GAAGTCGTTG AGGAAGTTAA AAAAGCAGAT TGGGGAATTG GAGAAACTTG AATCTCCGGA TCGGTTGAAT AATGTGAAGC CTATCTTCAT CAAGCGCAgt atccttttct gttgtcacaa gatgctattt ttttttgtca tacaaaactg tggaatatta tttgttttca catgacgagc ttggttttaa gATATATACT TGAAGAAGAA ACTCAAGAAG AAAGTTAAGG ATCATGGCAT ATTCTGTTCT TGCTCCTTGG ATCCTGGTTC TTCAACTCTT TGTGGCAGCG ATTGCAATTG TGGgtatgtt ccatatctga tcacaagtac ttgtctgact aaatattcgt ggcggcattg gttctgattg ttgatgtatt gttggttttt tccttgatgt atagGATTCT ACTCTCAAGC TGTTCGTCTA GTTGCAAATG CAGTAGTGAA TGCACCAACA AGCCGTTCCA ACAACGACAT ATCAAGAAGA TGAAGTTAGT TCAGgttggt ttattacaat ttgttgtctt atataaagaa tgcattttca acgttagttg aataagttgt tgcttgcagA CAGAGAAATG TGGATATGGG ATTGTAGCAG ATGAAGATAT CAACTCAGGA GAGTTTATCA TTGAATATGT GGGAGAAGgt gatgttatta cctttggttt ctcatatata gttagagtac tgttgtgatt actctgctta ctcttatcaa tcttcttata tccatttctt attgtagTTA TTGACGACAA GATTTGTGAA GAAAGGCTTT GGAAGCTGAA TCATAAGGTC GAGACAAATT TCTATTTGTG TCAGATAAAC TGGAACATGG TGATTGATGC TACTCACAAG GGTAATAAAT CAAGATACAT CAATCACAGC TGCAGTCCTA ACACAGAGAT GCAGAAATGg ttcgtttgta acttattatc catcttctca cttttcttct gttcaaaaca attgagcaaa gttatagatc atgaaccttt ttgttcccat ttagGATAAT TGATGGCGAG ACAAGAATCG GCATTTTTGC TACCCGTTTC ATAAACAAAG GCGAGCAGTT GACTTACGAT TACCAgtaag aacatttcct tgcatcacaa caataaagta tttgaatgta aatgtttagt tgtgtgatac taataaatat agcagGTTTG TTCAGTTTGG TGCAGATCAA GATTGCTACT GTGGTGCAGT GTGTTGCAGA AAAAAGCTAG GTGCAAAACC TTGCAAAACT AAGAACACAA CCTTAGAAGA AGCTGTGAAG CCAGTGGCAT GTAAAGTGAC CTGGAAAACG CCCAAGgtaa atttgagctt tgccttactt ttttttagtc atcctgtgat tgctaaacag taacttgtcc tttcaaacat atggttaggg aaaaactcga gggagacgca ttgctggtta gtattaatta tttggctcga ttatcgacaa gCTTCTCAAT TCAGAGGTAA GAGAAACCAA TTTGGATGCG TCAGGACAAG CTTGGAACAA TCATAGCCAG AGGAAAATAT GTTGCCGGGA CTGCATTGGT GCGgtgatct ggttagcacg tcccatgaac caaaagtata actatctttc tttttttctc aaaaaccaat ttcttccaca ccaaagaaca gTATTACACG GCTCAGATGA AGGTTTTGAC TCTAGTAGTT GACATTTTTC AGgtgttttg gaatcattac acaatatgat gagttttaaa taagcacttg gtatctattc atttgactta ttgccaacac tgttgttcac attctatctc agtttacgaa atctaaagaa tgaacattga ctttgtccag GTCATGTATG AGGATGGTGT TACCGAGATC ATCGACATGT GCAGAGAAGT TTGGAAGGTT GTAACTGCTT GAtattgtga ctgttccaag tctgatttca ttcccttaca taggattaca cttgaattgt caagaaattt tgtaaccaac caaaccgtgt cggttggcaa ataggtttag actttgttgt tgtatgtatc caacttgaat cagtagttca gtagtacatt acactgtatg tggaatcttt ggaccaaata aagaaaagtg tttttggatt ttaaaccggg gttttggtta tttaagagac aaaaaatctc atacccggtt tgctctgtct ataactcgag tttgtt |
Transcript Splice Model
500-517 |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 |
>SDG24 | Arabidopsis thaliana | transcript sequence | ASH1 Group
ATGTCTTCCT CGAAGAAGGG TTCCGATCGG AATCAAATCA GGAAGTCGTT GAGGAAGTTA AAAAAGCAGA TTGGGGAATT GGAGAAACTT GAATCTCCGG ATCGGTTGAA TAATGTGAAG CCTATCTTCA TCAAGCGCAA TATATACTTG AAGAAGAAAC TCAAGAAGAA AGTTAAGGAT CATGGCATAT TCTGTTCTTG CTCCTTGGAT CCTGGTTCTT CAACTCTTTG TGGCAGCGAT TGCAATTGTG GGATTCTACT CTCAAGCTGT TCGTCTAGTT GCAAATGCAG TAGTGAATGC ACCAACAAGC CGTTCCAACA ACGACATATC AAGAAGATGA AGTTAGTTCA GACAGAGAAA TGTGGATATG GGATTGTAGC AGATGAAGAT ATCAACTCAG GAGAGTTTAT CATTGAATAT GTGGGAGAAG TTATTGACGA CAAGATTTGT GAAGAAAGGC TTTGGAAGCT GAATCATAAG GTCGAGACAA ATTTCTATTT GTGTCAGATA AACTGGAACA TGGTGATTGA TGCTACTCAC AAGGGTAATA AATCAAGATA CATCAATCAC AGCTGCAGTC CTAACACAGA GATGCAGAAA TGGATAATTG ATGGCGAGAC AAGAATCGGC ATTTTTGCTA CCCGTTTCAT AAACAAAGGC GAGCAGTTGA CTTACGATTA CCAGTTTGTT CAGTTTGGTG CAGATCAAGA TTGCTACTGT GGTGCAGTGT GTTGCAGAAA AAAGCTAGGT GCAAAACCTT GCAAAACTAA GAACACAACC TTAGAAGAAG CTGTGAAGCC AGTGGCATGT AAAGTGACCT GGAAAACGCC CAAGCTTCTC AATTCAGAGG TAAGAGAAAC CAATTTGGAT GCGTCAGGAC AAGCTTGGAA CAATCATAGC CAGAGGAAAA TATGTTGCCG GGACTGCATT GGTGCGTATT ACACGGCTCA GATGAAGGTT TTGACTCTAG TAGTTGACAT TTTTCAGGTC ATGTATGAGG ATGGTGTTAC CGAGATCATC GACATGTGCA GAGAAGTTTG GAAGGTTGTA ACTGCTTGA |
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1 61 121 181 241 301 361 421 481 541 601 661 721 781 841 901 961 1021 |
>SDG24 | Arabidopsis thaliana | orf sequence | ASH1 Group
ATGTCTTCCT CGAAGAAGGG TTCCGATCGG AATCAAATCA GGAAGTCGTT GAGGAAGTTA AAAAAGCAGA TTGGGGAATT GGAGAAACTT GAATCTCCGG ATCGGTTGAA TAATGTGAAG CCTATCTTCA TCAAGCGCAA TATATACTTG AAGAAGAAAC TCAAGAAGAA AGTTAAGGAT CATGGCATAT TCTGTTCTTG CTCCTTGGAT CCTGGTTCTT CAACTCTTTG TGGCAGCGAT TGCAATTGTG GGATTCTACT CTCAAGCTGT TCGTCTAGTT GCAAATGCAG TAGTGAATGC ACCAACAAGC CGTTCCAACA ACGACATATC AAGAAGATGA AGTTAGTTCA GACAGAGAAA TGTGGATATG GGATTGTAGC AGATGAAGAT ATCAACTCAG GAGAGTTTAT CATTGAATAT GTGGGAGAAG TTATTGACGA CAAGATTTGT GAAGAAAGGC TTTGGAAGCT GAATCATAAG GTCGAGACAA ATTTCTATTT GTGTCAGATA AACTGGAACA TGGTGATTGA TGCTACTCAC AAGGGTAATA AATCAAGATA CATCAATCAC AGCTGCAGTC CTAACACAGA GATGCAGAAA TGGATAATTG ATGGCGAGAC AAGAATCGGC ATTTTTGCTA CCCGTTTCAT AAACAAAGGC GAGCAGTTGA CTTACGATTA CCAGTTTGTT CAGTTTGGTG CAGATCAAGA TTGCTACTGT GGTGCAGTGT GTTGCAGAAA AAAGCTAGGT GCAAAACCTT GCAAAACTAA GAACACAACC TTAGAAGAAG CTGTGAAGCC AGTGGCATGT AAAGTGACCT GGAAAACGCC CAAGCTTCTC AATTCAGAGG TAAGAGAAAC CAATTTGGAT GCGTCAGGAC AAGCTTGGAA CAATCATAGC CAGAGGAAAA TATGTTGCCG GGACTGCATT GGTGCGTATT ACACGGCTCA GATGAAGGTT TTGACTCTAG TAGTTGACAT TTTTCAGGTC ATGTATGAGG ATGGTGTTAC CGAGATCATC GACATGTGCA GAGAAGTTTG GAAGGTTGTA ACTGCTTGA |
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1 61 121 181 241 301 |
>SDG24 | Arabidopsis thaliana | protein sequence | ASH1 Group
MSSSKKGSDR NQIRKSLRKL KKQIGELEKL ESPDRLNNVK PIFIKRNIYL KKKLKKKVKD HGIFCSCSLD PGSSTLCGSD CNCGILLSSC SSSCKCSSEC TNKPFQQRHI KKMKLVQTEK CGYGIVADED INSGEFIIEY VGEVIDDKIC EERLWKLNHK VETNFYLCQI NWNMVIDATH KGNKSRYINH SCSPNTEMQK WIIDGETRIG IFATRFINKG EQLTYDYQFV QFGADQDCYC GAVCCRKKLG AKPCKTKNTT LEEAVKPVAC KVTWKTPKLL NSEVRETNLD ASGQAWNNHS QRKICCRDCI GAYYTAQMKV LTLVVDIFQV MYEDGVTEII DMCREVWKVV TA |
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Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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