• ChromDB Contents
• Advanced Search
• BLAST ChromDB

Sequence Tools

Form FASTA Files by

• Sequence
• Domain

Organisms

Genomic-Based

• Arabidopsis thaliana
• Oryza sativa ssp. japonica
• Populus trichocarpa
• Zea mays
•    And more...

Transcript-Based

• Triticum aestivum
• Hordeum vulgare
• Homo sapiens
• Saccharomyces cerevisiae
• Drosophila melanagogaster
•    And more...

Viewers

• Exon Viewer
• Pfam Domain Viewer
• SMART Domain Viewer

Reports

• Genomic-based Reports
• Protein-based Reports
• Loci
• Synonyms
• Protein Group Counts
• Organism Information
• Protein Group Information
• Arabidopsis Paralogons

RNAi

• Vector Information
• Order Vectors
• RNAi Lines

Extras

• Chromatin For Beginners
• Archive
• About Us
• External Links

Sort by Organism ID

Organism	Common name	Organism Abbrev	Organism ID	Sequence Type	Genes
Acorus americanus	sweetflag	ACOAM	99	transcript	6
Aedes aegypti	Yellow fever mosquito	AEDAE	189	transcript	3
Aegilops speltoides	goatgrass	AEGSP	79	transcript	3
Agapanthus praecox	African-lily	AGAPR	126	transcript	1
Ajellomyces capsulatus NAm1		AJECAN	228	transcript	119
Allium cepa	garden onion	ALLCE	142	transcript	11
Allium sativum	cultivated garlic	ALLSA	111	transcript	1
Amborella trichopoda		AMBTR	246	transcript	1
Anopheles gambiae str. PEST	African malaria mosquito	ANOGA	153	transcript	63
Antirrhinum majus	garden snapdragon	ANTMA	109	transcript	29
Apis mellifera	honey bee	APIME	156	transcript	27
Apium graveolens	wild celery	APIGR	144	transcript	2
Aquilegia alpina		AGUAL	155	transcript	5
Aquilegia formosa x Aquilegia pubescens	columbine	AQUFO	19	transcript	80
Arabidopsis lyrata	Lyrate rockcress	ARALY	212	genomic	438
Arabidopsis thaliana	mouse-ear cress	ARATH	0	genomic	516
Arachis hypogaea	peanut	ARAHY	105	transcript	2
Aranda deborah	vanda orchid	ARADE	132	transcript	1
Ascobolus immersus		ASCIM	42	transcript	3
Ashbya gossypii ATCC 10895		ASHGO	28	transcript	135
Asparagus officinalis	garden asparagus	ASPOF	80	transcript	8
Asparagus virgatus		ASPVI	86	transcript	2
Aspergillus clavatus NRRL 1		ASPCL	225	transcript	8
Aspergillus flavus NRRL3357		ASPFL	242	transcript	1
Aspergillus fumigatus		ASPFU	41	transcript	142
Aspergillus nidulans FGSC A4		ASPNI	27	transcript	133
Aspergillus niger ATCC 1015		ASPNR	88	transcript	126
Aspergillus oryzae RIB40		ASPOR	243	transcript	3
Aspergillus terreus NIH2624		ASPTE	168	transcript	124
Avena sativa	oat	AVESA	154	transcript	1
Batrachochytrium dendrobatidis JEL423		BATDE	198	transcript	167
Beta vulgaris	common beet	BETVU	114	transcript	6
Bos taurus	cow	BOSTA	141	transcript	40
Botryotinia fuckeliana B05.10		BOTFU	232	transcript	136
Brassica napus	rape	BRANA	108	transcript	32
Brassica oleracea	asparagus broccoli	BRAOL	169	transcript	1
Brassica rapa	field mustard	BRARA	197	transcript	2
Caenorhabditis elegans	nematode	CAEEL	3	transcript	253
Callitropsis nootkatensis	Sitka cypress	CALNO	147	transcript	1
Canavalia gladiata	sword jackbean	CANGLA	127	transcript	2
Candida albicans		CANAL	32	transcript	131
Candida glabrata CBS 138		CANGL	31	transcript	145
Candida lusitaniae ATCC 42720		CANLU	219	transcript	116
Candida tropicalis MYA-3404		CANTR	220	transcript	121
Canis familiaris	dog	CANFA	138	transcript	94
Capitella sp.1		CAPSP	182	transcript	1
Capsicum annuum	cayenne pepper	CAPAN	195	transcript	9
Carica papaya	Papaya	CARPA	130	genomic	311
Castanea mollissima	Chinese chestnut	CASMO	249	transcript	1
Ceratopteris richardii		CERRI	43	transcript	6
Chaetomium globosum CBS 148.51		CHAGL	158	transcript	154
Chlamydomonas reinhardtii		CHLRE	34	genomic	168
Chlorella sp. NC64A		CHLNC	190	genomic	94
Chlorella vulgaris C-169		CHLVU	234	transcript	97
Cicer arietinum	chick pea	CICAR	120	transcript	2
Citrus sinensis	sweet orange	CITSI	194	transcript	15
Coccidioides immitis RS		COCIM	47	transcript	151
Coccidioides posadasii RMSCC 3488		COCPO	222	transcript	135
Coffea canephora	robusta coffee	COFCA	166	transcript	1
Coprinus cinereus okayama7#130		COPCI	172	transcript	134
Cryptococcus neoformans var. neoformans JEC21		CRYNE	29	transcript	132
Cryptosporidium parvum		CRYPA	103	transcript	15
Cucumis sativus	garden cucumber	CUCSA	97	transcript	5
Cyanidioschyzon merolae strain 10D		CYAME	145	transcript	109
Cycas rumphii		CYCRU	68	transcript	5
Danio rerio	zebrafish	DANRE	160	transcript	301
Daucus carota	carrot	DAUCA	175	transcript	1
Debaryomyces hansenii CBS767		DEBHA	40	transcript	126
Dendrobium grex Madame Thong-In	Dendrobium hybrid	DENGR	135	transcript	3
Dictyostelium discoideum AX4		DICDI	44	transcript	58
Dictyostelium purpureum		DICPU	211	transcript	80
Drosophila melanogaster	fruit fly	DROME	4	transcript	210
Drosophila pseudoobscura pseudoobscura		DROPS	173	transcript	7
Ectocarpus siliculosus		ECTSI	218	transcript	220
Elaeis guineensis	African oil palm	ELAGU	133	transcript	2
Emiliania huxleyi CCMP1516		EMIHU	196	genomic	240
Equus caballus	Horse	EQUCA	208	transcript	5
Eschscholzia californica	California poppy	ESCCAL	84	transcript	5
Eucalyptus globulus subsp. globulus	Tasmanian bluegum	EUCGL	121	transcript	2
Eucalyptus grandis	grand eucalyptus	EUCGR	131	transcript	3
Eucalyptus occidentalis	flat-top yate	EUCOC	143	transcript	1
Euphorbia esula	leafy spurge	EUPSU	171	transcript	8
Festuca pratensis	Meadow ryegrass	FESPR	248	transcript	1
Fragaria x ananassa	strawberry	FRAANA	96	transcript	2
Fritillaria agrestis	stinkbells	FRIAG	67	transcript	2
Fritillaria liliacea	stinkbells	FRILIL	170	transcript	2
Fusarium oxysporum f. sp. lycopersici		FUSOX	226	transcript	146
Gallus gallus	chicken	GALGA	150	transcript	59
Gerbera hybrid cultivar		GERHY	134	transcript	5
Gibberella moniliformis 7600		GIBMO	227	transcript	136
Gibberella zeae PH-1		GIBZE	39	transcript	154
Glycine soja	wild soybean	GLYSO	48	transcript	4
Gnetum gnemon		GNEGN	118	transcript	5
Gossypium arboreum	tree cotton	GOSAR	101	transcript	10
Gossypium hirsutum	upland cotton	GOSHI	33	transcript	6
Gossypium raimondii	cotton	GOSRA	89	transcript	14
Helianthus annuus	common sunflower	HELAN	192	transcript	9
Homo sapiens	human	HOMSA	5	transcript	408
Hordeum vulgare	common barley	HORVU	10	transcript	191
Hyacinthus orientalis	garden hyacinth	HYAOR	66	transcript	4
Ipomoea batatas	sweetpotato	IPOBA	49	transcript	4
Ipomoea nil	whiteedge morning-glory	IPONI	71	transcript	12
Ipomoea trifida		IPOTR	205	genomic	0
Kluyveromyces lactis NRRL Y-1140		KLULA	60	transcript	136
Laccaria bicolor		LACBI	162	transcript	137
Lactuca sativa	garden lettuce	LACSA	193	transcript	16
Lactuca serriola		LACSE	119	transcript	2
Lathyrus aphaca	yellow pea	LATAP	50	transcript	1
Lathyrus sativus	white pea	LATSA	55	transcript	1
Lens culinaris	lentil	LENCU	56	transcript	1
Lilium longiflorum	Easter lily	LILLO	54	transcript	6
Linum usitatissimum	common flax	LINUS	53	transcript	3
Liriodendron tulipifera	tuliptree	LIRTU	94	transcript	1
Lodderomyces elongisporus NRRL YB-4239		LODEL	336	transcript	81
Lolium multiflorum	ryegrass	LOLMU	95	transcript	2
Lolium perenne	perennial ryegrass	LOLPE	115	transcript	3
Lolium temulentum	Darnel ryegrass	LOLTE	136	transcript	2
Lotus japonicus	birdfoot deervetch	LOTJA	17	genomic	19
Lupinus albus	white lupine	LUPAL	82	transcript	1
Lycopodium annotinum		LYCAN	104	transcript	2
Macaca mulatta	rhesus monkey	MACMU	165	transcript	7
Magnaporthe grisea 70-15	rice blast fungus	MAGGR	30	transcript	158
Magnolia praecocissima		MAGPR	117	transcript	10
Malus x domestica	apple	MALUSD	70	transcript	179
Manihot esculenta	Cassava	MANES	85	transcript	2
Medicago sativa	alfalfa	MEDSA	72	transcript	3
Medicago truncatula	barrelclover	MEDTR	13	genomic	176
Mesembryanthemum crystallinum	common iceplant	MESCR	106	transcript	7
Micromonas pusilla CCMP1545		MICPUC	200	genomic	155
Micromonas pusilla NOUM17		MICPUN	201	genomic	188
Monodelphis domestica	Gray short-tailed opossum	MONDO	206	transcript	7
Monosiga brevicollis		MONBR	174	transcript	145
Mus musculus	house mouse	MUSMU	37	transcript	381
Musa acuminata	banana	MUSAC	128	transcript	1
Musa balbisiana	Plantain	MUSBA	204	genomic	1
Nectria haematococca		NECHA	21	genomic	169
Neurospora crassa OR74A	red bread mold	NEUCR	20	transcript	162
Nicotiana benthamiana	tobacco	NICBE	73	transcript	13
Nicotiana tabacum	cultivated tobacco	NICTA	23	transcript	29
Ornithorhynchus anatinus	Platypus	ORNAN	207	transcript	6
Oryza sativa (indica cultivar-group)	indica rice	ORYSAI	22	genomic	361
Oryza sativa ssp. japonica	rice	ORYSA	7	genomic	514
Ostreococcus lucimarinus		OSTLU	35	genomic	161
Ostreococcus tauri		OSTTA	36	transcript	144
Pan troglodytes	chimpanzee	PANTR	148	transcript	71
Panicum virgatum	switchgrass	PANVI	125	transcript	1
Paracoccidioides brasiliensis Pb01		PARBR	233	transcript	112
Paulownia kawakamii	empress tree	PAUKA	116	transcript	1
Penicillium chrysogenum Wisconsin 54-1255		PENCH	240	transcript	5
Petroselinum crispum	parsley	PETCR	98	transcript	1
Petunia hybrida	petunia	PETHY	74	transcript	36
Phaeodactylum tricornutum		PHATR	152	genomic	163
Phaeosphaeria nodorum SN15		PHANO	167	transcript	206
Phanerochaete chrysosporium		PHACH	112	transcript	103
Phaseolus coccineus	scarlet runner	PHACO	78	transcript	7
Physcomitrella patens	moss	PHYPA	15	genomic	375
Phytophthora ramorum		PHYRA	202	genomic	28
Phytophthora sojae		PHYSO	65	transcript	96
Picea abies	Norway spruce	PICAB	123	transcript	3
Picea glauca	spruce	PICGL	75	transcript	7
Picea sitchensis	Sitka spruce	PICSI	76	transcript	3
Pichia guilliermondii ATCC 6260		PICGU	221	transcript	80
Pichia stipitis CBS 6054		PICST	83	transcript	101
Pimpinella brachycarpa	saxifrage	PIMBR	129	transcript	1
Pinus pinaster	maritime pine	PINPI	57	transcript	6
Pinus radiata	Monterey pine	PINRA	124	transcript	6
Pinus taeda	loblolly pine	PINTA	18	transcript	29
Pisum fulvum	tawny pea	PISFU	59	transcript	1
Pisum sativum	pea	PISSA	107	transcript	16
Plasmodium falciparum		PLAFA	191	transcript	18
Poncirus trifoliata	hardy orange	PONTR	90	transcript	7
Populus trichocarpa	poplar	POPTR	9	genomic	601
Prunus persica	peach	PRUPE	58	transcript	3
Puccinia graminis f. sp. tritici CRL 75-36-700-3	rust	PUCGR	229	transcript	148
Rattus norvegicus	Norway rat	RATNO	137	transcript	94
Ricinus communis	Castor bean	RICCO	209	genomic	379
Saccharomyces cerevisiae	baker's yeast	SACCE	2	transcript	153
Saccharomyces mikatae IFO 1815		SACMI	181	transcript	7
Saccharomyces paradoxus NRRL Y-17217		SACPA	178	transcript	2
Saccharum officinarum	sugarcane	SACOF	25	transcript	19
Schizosaccharomyces japonicus yFS275		SCHJA	199	transcript	149
Schizosaccharomyces pombe 972h-	fission yeast	SCHPO	6	transcript	158
Secale cereale	cereal rye	SECCE	62	transcript	3
Silene diclinis	Catchfly	SILDI	91	transcript	1
Sinapis alba	white mustard	SINAL	122	transcript	4
Solanum chilense	tomato	SOLCH	51	transcript	1
Solanum habrochaites	tomato	SOLHA	52	transcript	1
Solanum lycopersicum	garden tomato	SOLLY	11	transcript	52
Solanum tuberosum	potato	SOLTU	14	transcript	29
Sorghum bicolor	sorghum	SORBI	26	genomic	461
Sorghum propinquum	sorghum	SORPR	61	transcript	2
Sphagnum sp. JL-2005		SPHSP	146	transcript	1
Sporobolomyces roseus IAM 13481		SPORO	176	transcript	135
Strongylocentrotus purpuratus	purple sea urchin	STRPU	149	transcript	214
Thalassiosira pseudonana CCMP1335		THAPS	151	transcript	143
Theobroma cacao	cacao	THECA	63	transcript	2
Tribolium castaneum	red flour beetle	TRICA	159	transcript	157
Trichoplax adhaerens		TRIAD	183	transcript	279
Triticum aestivum	common wheat	TRIAE	8	transcript	168
Triticum monococcum	wheat	TRIMO	77	transcript	11
Ustilago maydis 521		USTMA	38	transcript	122
Vicia species	vetch	VICSP	100	transcript	3
Vitis vinifera	grape	VITVI	69	genomic	323
Xenopus tropicalis		XENTR	139	transcript	12
Yarrowia lipolytica CLIB122		YARLI	81	transcript	132
Zea mays	corn	ZEAMA	1	genomic	449
Zygosaccharomyces rouxii CBS 732		ZYGRO	203	transcript	6

Acknowledgements: ChromDB is funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
Design by Western Sky Communications