ChromDB::Chromatin Database

Sort by Organism ID

Organism	Common name	Organism Abbrev	Organism ID	Sequence Type	Genes
Acorus americanus	sweetflag	ACOAM	99	transcript	6
Aedes aegypti	Yellow fever mosquito	AEDAE	189	transcript	3
Aegilops speltoides	goatgrass	AEGSP	79	transcript	3
Agapanthus praecox	African-lily	AGAPR	126	transcript	1
Ajellomyces capsulatus NAm1		AJECA	228	transcript	118
Allium cepa	garden onion	ALLCE	142	transcript	11
Allium sativum	cultivated garlic	ALLSA	111	transcript	1
Amborella trichopoda		AMBTR	246	transcript	1
Anopheles gambiae str. PEST	African malaria mosquito	ANOGA	153	transcript	87
Antirrhinum majus	garden snapdragon	ANTMA	109	transcript	28
Apis mellifera	honey bee	APIME	156	transcript	28
Apium graveolens	wild celery	APIGR	144	transcript	2
Aquilegia alpina		AGUAL	155	transcript	5
Aquilegia coerulea		AQUCO	257	transcript	448
Aquilegia formosa x Aquilegia pubescens	columbine	AQUFO	19	transcript	78
Arabidopsis lyrata	Lyrate rockcress	ARALY	212	genomic	467
Arabidopsis thaliana	mouse-ear cress	ARATH	0	genomic	559
Arachis hypogaea	peanut	ARAHY	105	transcript	2
Aranda deborah	vanda orchid	ARADE	132	transcript	1
Ascobolus immersus		ASCIM	42	transcript	3
Ashbya gossypii ATCC 10895		ASHGO	28	transcript	136
Asparagus officinalis	garden asparagus	ASPOF	80	transcript	8
Asparagus virgatus		ASPVI	86	transcript	2
Aspergillus clavatus NRRL 1		ASPCL	225	transcript	28
Aspergillus flavus NRRL3357		ASPFL	242	transcript	10
Aspergillus fumigatus		ASPFU	41	transcript	144
Aspergillus nidulans FGSC A4		ASPNI	27	transcript	160
Aspergillus niger CBS 513.88		ASPNR	88	transcript	141
Aspergillus oryzae RIB40		ASPOR	243	transcript	18
Aspergillus terreus NIH2624		ASPTE	168	transcript	144
Avena sativa	oat	AVESA	154	transcript	1
Batrachochytrium dendrobatidis JEL423		BATDE	198	transcript	165
Beta vulgaris	common beet	BETVU	114	transcript	6
Bos taurus	cow	BOSTA	141	transcript	69
Botryotinia fuckeliana B05.10		BOTFU	232	transcript	155
Brachypodium distachyon	Purple false brome	BRADI	113	transcript	360
Brassica napus	rape	BRANA	108	transcript	31
Brassica oleracea	asparagus broccoli	BRAOL	169	transcript	1
Caenorhabditis elegans	nematode	CAEEL	3	transcript	281
Callitropsis nootkatensis	Sitka cypress	CALNO	147	transcript	1
Canavalia gladiata	sword jackbean	CANGLA	127	transcript	2
Candida albicans		CANAL	32	transcript	131
Candida glabrata CBS 138		CANGL	31	transcript	170
Candida lusitaniae ATCC 42720		CANLU	219	transcript	115
Candida tropicalis MYA-3404		CANTR	220	transcript	119
Canis familiaris	dog	CANFA	138	transcript	117
Capitella sp.1		CAPSP	182	transcript	1
Capsella rubella		CAPRU	284	transcript	354
Capsicum annuum	cayenne pepper	CAPAN	195	transcript	9
Carica papaya	Papaya	CARPA	130	genomic	301
Castanea mollissima	Chinese chestnut	CASMO	249	transcript	1
Ceratopteris richardii		CERRI	43	transcript	6
Chaetomium globosum CBS 148.51		CHAGL	158	transcript	161
Chlamydomonas reinhardtii		CHLRE	34	genomic	173
Cicer arietinum	chick pea	CICAR	120	transcript	2
Ciona intestinalis	sea squirt	CIOIN	163	transcript	135
Citrus clementina		CITCL	167	transcript	286
Citrus sinensis	sweet orange	CITSI	194	transcript	147
Coccidioides immitis RS		COCIM	47	transcript	174
Coccidioides posadasii RMSCC 3488		COCPO	222	transcript	135
Coffea arabica	Arabica coffee	COFAR	251	genomic	0
Coffea canephora	robusta coffee	COFCA	166	transcript	1
Coprinus cinereus okayama7#130		COPCI	172	transcript	137
Cryptococcus neoformans var. neoformans JEC21		CRYNE	29	transcript	134
Cryptosporidium parvum		CRYPA	103	transcript	15
Cucumis sativus	garden cucumber	CUCSA	97	transcript	131
Cyanidioschyzon merolae strain 10D		CYAME	145	transcript	107
Cycas rumphii		CYCRU	68	transcript	5
Danio rerio	zebrafish	DANRE	160	transcript	343
Daucus carota	carrot	DAUCA	175	transcript	1
Debaryomyces hansenii CBS767		DEBHA	40	transcript	143
Dendrobium grex Madame Thong-In	Dendrobium hybrid	DENGR	135	transcript	3
Dictyostelium discoideum AX4		DICDI	44	transcript	107
Dictyostelium purpureum		DICPU	211	transcript	81
Drosophila melanogaster	fruit fly	DROME	4	transcript	239
Drosophila pseudoobscura pseudoobscura		DROPS	173	transcript	7
Ectocarpus siliculosus		ECTSI	218	transcript	215
Elaeis guineensis	African oil palm	ELAGU	133	transcript	2
Emiliania huxleyi CCMP1516		EMIHU	196	genomic	236
Equus caballus	Horse	EQUCA	208	transcript	8
Eschscholzia californica	California poppy	ESCCAL	84	transcript	5
Eucalyptus globulus subsp. globulus	Tasmanian bluegum	EUCGL	121	transcript	2
Eucalyptus grandis	grand eucalyptus	EUCGR	131	transcript	122
Eucalyptus occidentalis	flat-top yate	EUCOC	143	transcript	1
Euphorbia esula	leafy spurge	EUPSU	171	transcript	8
Eutrema halophilum	Salt Cress	EUTHA	281	transcript	371
Festuca pratensis	Meadow ryegrass	FESPR	248	transcript	1
Fragaria x ananassa	strawberry	FRAANA	96	transcript	2
Fritillaria agrestis	stinkbells	FRIAG	67	transcript	2
Fritillaria liliacea	stinkbells	FRILIL	170	transcript	2
Fusarium oxysporum f. sp. lycopersici		FUSOX	226	transcript	146
Gallus gallus	chicken	GALGA	150	transcript	80
Gerbera hybrid cultivar		GERHY	134	transcript	5
Gibberella moniliformis 7600		GIBMO	227	transcript	137
Gibberella zeae PH-1		GIBZE	39	transcript	181
Glycine max	soybean	GLYMA	12	transcript	516
Glycine soja	wild soybean	GLYSO	48	transcript	4
Gnetum gnemon		GNEGN	118	transcript	5
Gossypium arboreum	tree cotton	GOSAR	101	transcript	10
Gossypium hirsutum	upland cotton	GOSHI	33	transcript	6
Helianthus annuus	common sunflower	HELAN	192	transcript	9
Homo sapiens	human	HOMSA	5	transcript	443
Hordeum vulgare	common barley	HORVU	10	transcript	203
Hyacinthus orientalis	garden hyacinth	HYAOR	66	transcript	4
Ipomoea batatas	sweetpotato	IPOBA	49	transcript	4
Ipomoea nil	whiteedge morning-glory	IPONI	71	transcript	12
Ipomoea trifida		IPOTR	205	genomic	0
Kluyveromyces lactis NRRL Y-1140		KLULA	60	transcript	159
Laccaria bicolor		LACBI	162	transcript	139
Lactuca sativa	garden lettuce	LACSA	193	transcript	16
Lactuca serriola		LACSE	119	transcript	2
Lathyrus aphaca	yellow pea	LATAP	50	transcript	1
Lathyrus sativus	white pea	LATSA	55	transcript	1
Lens culinaris	lentil	LENCU	56	transcript	1
Lilium longiflorum	Easter lily	LILLO	54	transcript	6
Linum usitatissimum	common flax	LINUS	53	transcript	73
Liriodendron tulipifera	tuliptree	LIRTU	94	transcript	1
Lodderomyces elongisporus NRRL YB-4239		LODEL	282	transcript	80
Lolium multiflorum	ryegrass	LOLMU	95	transcript	2
Lolium perenne	perennial ryegrass	LOLPE	115	transcript	3
Lolium temulentum	Darnel ryegrass	LOLTE	136	transcript	2
Lotus japonicus	birdfoot deervetch	LOTJA	17	genomic	31
Lupinus albus	white lupine	LUPAL	82	transcript	1
Lycopodium annotinum		LYCAN	104	transcript	2
Macaca mulatta	rhesus monkey	MACMU	165	transcript	8
Magnaporthe oryzea 70-15	rice blast fungus	MAGOR	30	transcript	184
Magnolia praecocissima		MAGPR	117	transcript	10
Malus x domestica	apple	MALUSD	70	transcript	267
Manihot esculenta	Cassava	MANES	85	transcript	397
Medicago sativa	alfalfa	MEDSA	72	transcript	3
Medicago truncatula	barrelclover	MEDTR	13	genomic	167
Mesembryanthemum crystallinum	common iceplant	MESCR	106	transcript	7
Micromonas pusilla CCMP1545		MICPUC	200	genomic	156
Micromonas pusilla NOUM17		MICPUN	201	genomic	187
Mimulus guttatus	Spotted monkey flower	MIMGU	45	transcript	330
Monodelphis domestica	Gray short-tailed opossum	MONDO	206	transcript	8
Monosiga brevicollis		MONBR	174	transcript	140
Mus musculus	house mouse	MUSMU	37	transcript	416
Musa acuminata	banana	MUSAC	128	transcript	1
Musa balbisiana	Plantain	MUSBA	204	genomic	1
Nectria haematococca		NECHA	21	genomic	199
Neurospora crassa OR74A	red bread mold	NEUCR	20	transcript	187
Nicotiana benthamiana	tobacco	NICBE	73	transcript	13
Nicotiana tabacum	cultivated tobacco	NICTA	23	transcript	30
Ornithorhynchus anatinus	Platypus	ORNAN	207	transcript	6
Oryza sativa (indica cultivar-group)	indica rice	ORYSAI	22	genomic	359
Oryza sativa ssp. japonica	rice	ORYSA	7	genomic	555
Ostreococcus lucimarinus		OSTLU	35	genomic	163
Ostreococcus sp. RCC809		OSTRC	87	genomic	90
Ostreococcus tauri		OSTTA	36	transcript	145
Pan troglodytes	chimpanzee	PANTR	148	transcript	94
Panicum virgatum	switchgrass	PANVI	125	transcript	309
Paracoccidioides brasiliensis Pb01		PARBR	233	transcript	113
Paulownia kawakamii	empress tree	PAUKA	116	transcript	1
Penicillium chrysogenum Wisconsin 54-1255		PENCH	240	transcript	29
Petroselinum crispum	parsley	PETCR	98	transcript	1
Petunia hybrida	petunia	PETHY	74	transcript	43
Phaeodactylum tricornutum		PHATR	152	genomic	164
Phanerochaete chrysosporium		PHACH	112	transcript	104
Phaseolus coccineus	scarlet runner	PHACO	78	transcript	7
Physcomitrella patens	moss	PHYPA	15	genomic	412
Phytophthora ramorum		PHYRA	202	genomic	28
Phytophthora sojae		PHYSO	65	transcript	96
Picea abies	Norway spruce	PICAB	123	transcript	3
Picea glauca	spruce	PICGL	75	transcript	7
Picea sitchensis	Sitka spruce	PICSI	76	transcript	5
Pichia guilliermondii ATCC 6260		PICGU	221	transcript	80
Pichia stipitis CBS 6054		PICST	83	transcript	101
Pimpinella brachycarpa	saxifrage	PIMBR	129	transcript	1
Pinus pinaster	maritime pine	PINPI	57	transcript	6
Pinus radiata	Monterey pine	PINRA	124	transcript	6
Pinus taeda	loblolly pine	PINTA	18	transcript	29
Pisum fulvum	tawny pea	PISFU	59	transcript	1
Pisum sativum	pea	PISSA	107	transcript	17
Plasmodium falciparum		PLAFA	191	transcript	18
Poncirus trifoliata	hardy orange	PONTR	90	transcript	7
Populus trichocarpa	poplar	POPTR	9	genomic	654
Prunus persica	peach	PRUPE	58	transcript	301
Puccinia graminis f. sp. tritici CRL 75-36-700-3	rust	PUCGR	229	transcript	145
Rattus norvegicus	Norway rat	RATNO	137	transcript	118
Ricinus communis	Castor bean	RICCO	209	genomic	407
Saccharomyces cerevisiae	baker's yeast	SACCE	2	transcript	182
Saccharomyces mikatae IFO 1815		SACMI	181	transcript	7
Saccharomyces paradoxus NRRL Y-17217		SACPA	178	transcript	2
Saccharum officinarum	sugarcane	SACOF	25	transcript	19
Schizosaccharomyces japonicus yFS275		SCHJA	199	transcript	170
Schizosaccharomyces pombe 972h-	fission yeast	SCHPO	6	transcript	182
Secale cereale	cereal rye	SECCE	62	transcript	3
Selaginella moellendorffii		SELMO	16	transcript	271
Setaria italica	foxtail millet	SETIT	258	transcript	441
Silene diclinis	Catchfly	SILDI	91	transcript	1
Sinapis alba	white mustard	SINAL	122	transcript	4
Solanum chilense	tomato	SOLCH	51	transcript	1
Solanum habrochaites	tomato	SOLHA	52	transcript	1
Sorghum bicolor	sorghum	SORBI	26	genomic	477
Sorghum propinquum	sorghum	SORPR	61	transcript	2
Sphagnum sp. JL-2005		SPHSP	146	transcript	1
Sporobolomyces roseus IAM 13481		SPORO	176	transcript	134
Strongylocentrotus purpuratus	purple sea urchin	STRPU	149	transcript	240
Thalassiosira pseudonana CCMP1335		THAPS	151	transcript	144
Theobroma cacao	cacao	THECA	63	transcript	166
Tribolium castaneum	red flour beetle	TRICA	159	transcript	159
Trichoplax adhaerens		TRIAD	183	transcript	266
Triticum aestivum	common wheat	TRIAE	8	transcript	183
Triticum monococcum	wheat	TRIMO	77	transcript	11
Ustilago maydis 521		USTMA	38	transcript	126
Vicia species	vetch	VICSP	100	transcript	3
Vitis vinifera	grape	VITVI	69	genomic	350
Volvox carteri f. nagariensis		VOLCA	64	genomic	125
Xenopus tropicalis		XENTR	139	transcript	12
Yarrowia lipolytica CLIB122		YARLI	81	transcript	148
Zea mays	corn	ZEAMA	1	genomic	484
Zygosaccharomyces rouxii CBS 732		ZYGRO	203	transcript	20

Search Tools

Sequence Tools

Organisms

Tutorials

Viewers

Reports

RNAi

Extras