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Organism	Common name	Organism Abbrev	Organism ID	Sequence Type	Genes
Arabidopsis thaliana	mouse-ear cress	ARATH	0	genomic	553
Zea mays	corn	ZEAMA	1	genomic	466
Saccharomyces cerevisiae	baker's yeast	SACCE	2	transcript	180
Caenorhabditis elegans	nematode	CAEEL	3	transcript	266
Drosophila melanogaster	fruit fly	DROME	4	transcript	234
Homo sapiens	human	HOMSA	5	transcript	438
Schizosaccharomyces pombe 972h-	fission yeast	SCHPO	6	transcript	170
Oryza sativa ssp. japonica	rice	ORYSA	7	genomic	537
Triticum aestivum	common wheat	TRIAE	8	transcript	183
Populus trichocarpa	poplar	POPTR	9	genomic	631
Hordeum vulgare	common barley	HORVU	10	transcript	203
Glycine max	soybean	GLYMA	12	transcript	455
Medicago truncatula	barrelclover	MEDTR	13	genomic	166
Physcomitrella patens	moss	PHYPA	15	genomic	382
Selaginella moellendorffii		SELMO	16	transcript	248
Lotus japonicus	birdfoot deervetch	LOTJA	17	genomic	20
Pinus taeda	loblolly pine	PINTA	18	transcript	29
Aquilegia formosa x Aquilegia pubescens	columbine	AQUFO	19	transcript	78
Neurospora crassa OR74A	red bread mold	NEUCR	20	transcript	172
Nectria haematococca		NECHA	21	genomic	181
Oryza sativa (indica cultivar-group)	indica rice	ORYSAI	22	genomic	359
Nicotiana tabacum	cultivated tobacco	NICTA	23	transcript	30
Saccharum officinarum	sugarcane	SACOF	25	transcript	19
Sorghum bicolor	sorghum	SORBI	26	genomic	458
Aspergillus nidulans FGSC A4		ASPNI	27	transcript	140
Ashbya gossypii ATCC 10895		ASHGO	28	transcript	136
Cryptococcus neoformans var. neoformans JEC21		CRYNE	29	transcript	133
Magnaporthe oryzea 70-15	rice blast fungus	MAGOR	30	transcript	168
Candida glabrata CBS 138		CANGL	31	transcript	156
Candida albicans		CANAL	32	transcript	131
Gossypium hirsutum	upland cotton	GOSHI	33	transcript	6
Chlamydomonas reinhardtii		CHLRE	34	genomic	171
Ostreococcus lucimarinus		OSTLU	35	genomic	162
Ostreococcus tauri		OSTTA	36	transcript	145
Mus musculus	house mouse	MUSMU	37	transcript	411
Ustilago maydis 521		USTMA	38	transcript	123
Gibberella zeae PH-1		GIBZE	39	transcript	162
Debaryomyces hansenii CBS767		DEBHA	40	transcript	131
Aspergillus fumigatus		ASPFU	41	transcript	144
Ascobolus immersus		ASCIM	42	transcript	3
Ceratopteris richardii		CERRI	43	transcript	6
Dictyostelium discoideum AX4		DICDI	44	transcript	90
Mimulus guttatus	Spotted monkey flower	MIMGU	45	transcript	303
Coccidioides immitis RS		COCIM	47	transcript	157
Glycine soja	wild soybean	GLYSO	48	transcript	4
Ipomoea batatas	sweetpotato	IPOBA	49	transcript	4
Lathyrus aphaca	yellow pea	LATAP	50	transcript	1
Solanum chilense	tomato	SOLCH	51	transcript	1
Solanum habrochaites	tomato	SOLHA	52	transcript	1
Linum usitatissimum	common flax	LINUS	53	transcript	2
Lilium longiflorum	Easter lily	LILLO	54	transcript	6
Lathyrus sativus	white pea	LATSA	55	transcript	1
Lens culinaris	lentil	LENCU	56	transcript	1
Pinus pinaster	maritime pine	PINPI	57	transcript	6
Prunus persica	peach	PRUPE	58	transcript	277
Pisum fulvum	tawny pea	PISFU	59	transcript	1
Kluyveromyces lactis NRRL Y-1140		KLULA	60	transcript	147
Sorghum propinquum	sorghum	SORPR	61	transcript	2
Secale cereale	cereal rye	SECCE	62	transcript	3
Theobroma cacao	cacao	THECA	63	transcript	1
Volvox carteri f. nagariensis		VOLCA	64	genomic	123
Phytophthora sojae		PHYSO	65	transcript	96
Hyacinthus orientalis	garden hyacinth	HYAOR	66	transcript	4
Fritillaria agrestis	stinkbells	FRIAG	67	transcript	2
Cycas rumphii		CYCRU	68	transcript	5
Vitis vinifera	grape	VITVI	69	genomic	332
Malus x domestica	apple	MALUSD	70	transcript	121
Ipomoea nil	whiteedge morning-glory	IPONI	71	transcript	12
Medicago sativa	alfalfa	MEDSA	72	transcript	3
Nicotiana benthamiana	tobacco	NICBE	73	transcript	13
Petunia hybrida	petunia	PETHY	74	transcript	41
Picea glauca	spruce	PICGL	75	transcript	7
Picea sitchensis	Sitka spruce	PICSI	76	transcript	5
Triticum monococcum	wheat	TRIMO	77	transcript	11
Phaseolus coccineus	scarlet runner	PHACO	78	transcript	7
Aegilops speltoides	goatgrass	AEGSP	79	transcript	3
Asparagus officinalis	garden asparagus	ASPOF	80	transcript	8
Yarrowia lipolytica CLIB122		YARLI	81	transcript	138
Lupinus albus	white lupine	LUPAL	82	transcript	1
Pichia stipitis CBS 6054		PICST	83	transcript	101
Eschscholzia californica	California poppy	ESCCAL	84	transcript	5
Manihot esculenta	Cassava	MANES	85	transcript	363
Asparagus virgatus		ASPVI	86	transcript	2
Ostreococcus sp. RCC809		OSTRC	87	genomic	90
Aspergillus niger CBS 513.88		ASPNR	88	transcript	128
Poncirus trifoliata	hardy orange	PONTR	90	transcript	7
Silene diclinis	Catchfly	SILDI	91	transcript	1
Liriodendron tulipifera	tuliptree	LIRTU	94	transcript	1
Lolium multiflorum	ryegrass	LOLMU	95	transcript	2
Fragaria x ananassa	strawberry	FRAANA	96	transcript	2
Cucumis sativus	garden cucumber	CUCSA	97	transcript	109
Petroselinum crispum	parsley	PETCR	98	transcript	1
Acorus americanus	sweetflag	ACOAM	99	transcript	6
Vicia species	vetch	VICSP	100	transcript	3
Gossypium arboreum	tree cotton	GOSAR	101	transcript	10
Cryptosporidium parvum		CRYPA	103	transcript	15
Lycopodium annotinum		LYCAN	104	transcript	2
Arachis hypogaea	peanut	ARAHY	105	transcript	2
Mesembryanthemum crystallinum	common iceplant	MESCR	106	transcript	7
Pisum sativum	pea	PISSA	107	transcript	17
Brassica napus	rape	BRANA	108	transcript	31
Antirrhinum majus	garden snapdragon	ANTMA	109	transcript	28
Allium sativum	cultivated garlic	ALLSA	111	transcript	1
Phanerochaete chrysosporium		PHACH	112	transcript	104
Brachypodium distachyon	Purple false brome	BRADI	113	transcript	331
Beta vulgaris	common beet	BETVU	114	transcript	6
Lolium perenne	perennial ryegrass	LOLPE	115	transcript	3
Paulownia kawakamii	empress tree	PAUKA	116	transcript	1
Magnolia praecocissima		MAGPR	117	transcript	10
Gnetum gnemon		GNEGN	118	transcript	5
Lactuca serriola		LACSE	119	transcript	2
Cicer arietinum	chick pea	CICAR	120	transcript	2
Eucalyptus globulus subsp. globulus	Tasmanian bluegum	EUCGL	121	transcript	2
Sinapis alba	white mustard	SINAL	122	transcript	4
Picea abies	Norway spruce	PICAB	123	transcript	3
Pinus radiata	Monterey pine	PINRA	124	transcript	6
Panicum virgatum	switchgrass	PANVI	125	transcript	8
Agapanthus praecox	African-lily	AGAPR	126	transcript	1
Canavalia gladiata	sword jackbean	CANGLA	127	transcript	2
Musa acuminata	banana	MUSAC	128	transcript	1
Pimpinella brachycarpa	saxifrage	PIMBR	129	transcript	1
Carica papaya	Papaya	CARPA	130	genomic	301
Eucalyptus grandis	grand eucalyptus	EUCGR	131	transcript	5
Aranda deborah	vanda orchid	ARADE	132	transcript	1
Elaeis guineensis	African oil palm	ELAGU	133	transcript	2
Gerbera hybrid cultivar		GERHY	134	transcript	5
Dendrobium grex Madame Thong-In	Dendrobium hybrid	DENGR	135	transcript	3
Lolium temulentum	Darnel ryegrass	LOLTE	136	transcript	2
Rattus norvegicus	Norway rat	RATNO	137	transcript	114
Canis familiaris	dog	CANFA	138	transcript	114
Xenopus tropicalis		XENTR	139	transcript	12
Bos taurus	cow	BOSTA	141	transcript	66
Allium cepa	garden onion	ALLCE	142	transcript	11
Eucalyptus occidentalis	flat-top yate	EUCOC	143	transcript	1
Apium graveolens	wild celery	APIGR	144	transcript	2
Cyanidioschyzon merolae strain 10D		CYAME	145	transcript	107
Sphagnum sp. JL-2005		SPHSP	146	transcript	1
Callitropsis nootkatensis	Sitka cypress	CALNO	147	transcript	1
Pan troglodytes	chimpanzee	PANTR	148	transcript	92
Strongylocentrotus purpuratus	purple sea urchin	STRPU	149	transcript	219
Gallus gallus	chicken	GALGA	150	transcript	79
Thalassiosira pseudonana CCMP1335		THAPS	151	transcript	144
Phaeodactylum tricornutum		PHATR	152	genomic	164
Anopheles gambiae str. PEST	African malaria mosquito	ANOGA	153	transcript	85
Avena sativa	oat	AVESA	154	transcript	1
Aquilegia alpina		AGUAL	155	transcript	5
Apis mellifera	honey bee	APIME	156	transcript	28
Chaetomium globosum CBS 148.51		CHAGL	158	transcript	157
Tribolium castaneum	red flour beetle	TRICA	159	transcript	159
Danio rerio	zebrafish	DANRE	160	transcript	337
Laccaria bicolor		LACBI	162	transcript	137
Ciona intestinalis	sea squirt	CIOIN	163	transcript	135
Macaca mulatta	rhesus monkey	MACMU	165	transcript	8
Coffea canephora	robusta coffee	COFCA	166	transcript	1
Citrus clementina		CITCL	167	transcript	1
Aspergillus terreus NIH2624		ASPTE	168	transcript	131
Brassica oleracea	asparagus broccoli	BRAOL	169	transcript	1
Fritillaria liliacea	stinkbells	FRILIL	170	transcript	2
Euphorbia esula	leafy spurge	EUPSU	171	transcript	8
Coprinus cinereus okayama7#130		COPCI	172	transcript	133
Drosophila pseudoobscura pseudoobscura		DROPS	173	transcript	7
Monosiga brevicollis		MONBR	174	transcript	140
Daucus carota	carrot	DAUCA	175	transcript	1
Sporobolomyces roseus IAM 13481		SPORO	176	transcript	134
Saccharomyces paradoxus NRRL Y-17217		SACPA	178	transcript	2
Saccharomyces mikatae IFO 1815		SACMI	181	transcript	7
Capitella sp.1		CAPSP	182	transcript	1
Trichoplax adhaerens		TRIAD	183	transcript	266
Aedes aegypti	Yellow fever mosquito	AEDAE	189	transcript	3
Plasmodium falciparum		PLAFA	191	transcript	18
Helianthus annuus	common sunflower	HELAN	192	transcript	9
Lactuca sativa	garden lettuce	LACSA	193	transcript	16
Citrus sinensis	sweet orange	CITSI	194	transcript	35
Capsicum annuum	cayenne pepper	CAPAN	195	transcript	9
Emiliania huxleyi CCMP1516		EMIHU	196	genomic	236
Batrachochytrium dendrobatidis JEL423		BATDE	198	transcript	165
Schizosaccharomyces japonicus yFS275		SCHJA	199	transcript	156
Micromonas pusilla CCMP1545		MICPUC	200	genomic	155
Micromonas pusilla NOUM17		MICPUN	201	genomic	187
Phytophthora ramorum		PHYRA	202	genomic	28
Zygosaccharomyces rouxii CBS 732		ZYGRO	203	transcript	13
Musa balbisiana	Plantain	MUSBA	204	genomic	1
Ipomoea trifida		IPOTR	205	genomic	0
Monodelphis domestica	Gray short-tailed opossum	MONDO	206	transcript	8
Ornithorhynchus anatinus	Platypus	ORNAN	207	transcript	6
Equus caballus	Horse	EQUCA	208	transcript	8
Ricinus communis	Castor bean	RICCO	209	genomic	391
Dictyostelium purpureum		DICPU	211	transcript	81
Arabidopsis lyrata	Lyrate rockcress	ARALY	212	genomic	438
Ectocarpus siliculosus		ECTSI	218	transcript	215
Candida lusitaniae ATCC 42720		CANLU	219	transcript	115
Candida tropicalis MYA-3404		CANTR	220	transcript	119
Pichia guilliermondii ATCC 6260		PICGU	221	transcript	80
Coccidioides posadasii RMSCC 3488		COCPO	222	transcript	135
Aspergillus clavatus NRRL 1		ASPCL	225	transcript	12
Fusarium oxysporum f. sp. lycopersici		FUSOX	226	transcript	146
Gibberella moniliformis 7600		GIBMO	227	transcript	137
Ajellomyces capsulatus NAm1		AJECA	228	transcript	118
Puccinia graminis f. sp. tritici CRL 75-36-700-3	rust	PUCGR	229	transcript	145
Botryotinia fuckeliana B05.10		BOTFU	232	transcript	139
Paracoccidioides brasiliensis Pb01		PARBR	233	transcript	112
Penicillium chrysogenum Wisconsin 54-1255		PENCH	240	transcript	12
Aspergillus flavus NRRL3357		ASPFL	242	transcript	2
Aspergillus oryzae RIB40		ASPOR	243	transcript	6
Amborella trichopoda		AMBTR	246	transcript	1
Festuca pratensis	Meadow ryegrass	FESPR	248	transcript	1
Castanea mollissima	Chinese chestnut	CASMO	249	transcript	1
Coffea arabica	Arabica coffee	COFAR	251	genomic	0
Aquilegia coerulea		AQUCO	257	transcript	420
Setaria italica	foxtail millet	SETIT	258	transcript	25
Eutrema halophilum	Salt Cress	EUTHA	281	transcript	6
Lodderomyces elongisporus NRRL YB-4239		LODEL	282	transcript	80
Capsella rubella		CAPRU	284	transcript	0

Acknowledgements: ChromDB was funded by a grant from the National Science Foundation Plant Genome Research Project(#DBI-0421679; PI Napoli). ChromDB is funded currently by a Mexican grant to R. Jorgensen via the Consejo Nacional de Ciencia y Tecnología (Conacyt). ChromDB server is hosted by the Biotechnology Computing Facility at the University of Arizona.
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